KCC000374A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000374A_C01 KCC000374A_c01
GTTCACTGCAAGCCAGACCTACCACCTAGATAAACATTAAACACAGGCAGAAGTCTTTCA
GAACGCGCCCCTGAGAAATGTCGGATATCGAGTCAACTCTGACCCGGATACAAGGGCACA
AGGGCGTCATCGGTGTCATTATCGTGAACAACCAGGGCGTGCCGCTTCGAAGCACGTTCG
AGCATGATGCCATGACCAAGCAATACGCAGACTTGGTGCCTGGCCTCGCGGACCTTGCGC
GCAACCTGGTGCGCGACCTGGACCCCCAGAACGACCTCGAGTTCCTGCGGATCCGCTCAC
ATAAACATGAAATCATGGTAGCAGCAAAGGACGACTTCGTCCTGCTAGTCATCCAGGACC
CCAACGCGGCCTCCACATAACACACCGGAGCCTGAGCAACTAGTGCCATGCGCCCGAAGC
CATGGGCATCGAAGGGAGCGCTGTATGCAATACCATCGGTCACTTTCGTTCGTTTGTTCA
GTTAATTTGTGTCAAGTGTGTGCGTGAGTATAAAGGACAGCCGTCCAGTCTGGCGCTGGG
GCAGCACGGAATGAGGTGGGGGAATACAGTGTGAGCGGGGCGTGCGGATGACGCGCCCTG
CTGGCACCCCGCATGTGGCGGTGGCGCGCGTAACAACGACAGCCGGTCACGTCACGTTCA
GTCTAATGCATCACAGCGTTGGAGCACTTGCGTCATCAGTAGCGTCACTGCTGGCGTCGA
CAACCATCAGCGACCCGCCGGGCACGCACGGCGGCGTCTGTCACCGCTTGGGTATGTGTG
TCATTTTGCGGCCACCACCGTTGTGGCCGCTCAGGTCTCCGGCGCTGCCGCCGCCCTCCA
TGTCGCCCACGGGGTGCAGCAGCATGGCGGACGCCTCTTCTAGCAGCGCGCGGCGCTGTG
GGTGGTTGGCCAGCATGGAGAGCGTGGAATCCTTCTCCTTGAGCATGCGGTTCAGGTCGG
CCAAATTGACGTCCAGGTCCTTGGTGGCATGCAGGAGGAAGGTGCCGCCCACGATGGTCA
CGAAGCCGCACGCGCCAGTGATCACTTGCTCTACGCTTTGCACGTCCCTGAACATGATGA
TGGAGGCCAGGATGGTGAGCAACGTGAACATGACGTAATACACCGGCGACACGATGGCGG
TGTTGAACAGGTCCAGCGCCTTGTTGAGGTAGTTCATCTGTGTCATCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000374A_C01 KCC000374A_c01
         (1189 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB61260.1| putative bithoraxoid-like protein [Spermatozopsi...   120  4e-26
ref|NP_523771.1| roadblock CG10751-PA [Drosophila melanogaster] ...   118  2e-25
ref|XP_311643.1| ENSANGP00000015035 [Anopheles gambiae] gi|31210...   117  3e-25
dbj|BAB85843.1| roadblock-related dynein light chain [Ciona inte...   109  1e-22
ref|NP_570967.1| dynein, cytoplasmic, light polypeptide 2B; dyne...   108  1e-22

>emb|CAB61260.1| putative bithoraxoid-like protein [Spermatozopsis similis]
          Length = 100

 Score =  120 bits (302), Expect = 4e-26
 Identities = 59/96 (61%), Positives = 78/96 (80%)
 Frame = +3

Query: 87  IESTLTRIQGHKGVIGVIIVNNQGVPLRSTFEHDAMTKQYADLVPGLADLARNLVRDLDP 266
           I++TL RIQ HKGV+G II+++ GV L ST + D  T +Y +L+P L+ LA+NLVRD+DP
Sbjct: 5   IQATLERIQKHKGVLGTIIIDHNGVTLHSTLD-DKTTAEYTELIPALSMLAKNLVRDVDP 63

Query: 267 QNDLEFLRIRSHKHEIMVAAKDDFVLLVIQDPNAAS 374
           QNDL+FLR+RS KHEIMVA K++F+L+VIQDP A S
Sbjct: 64  QNDLDFLRVRSLKHEIMVAPKEEFLLIVIQDPAAVS 99

>ref|NP_523771.1| roadblock CG10751-PA [Drosophila melanogaster]
           gi|5668624|gb|AAD45986.1|AF141920_1 roadblock
           [Drosophila melanogaster]
           gi|5668626|gb|AAD45987.1|AF141921_1 roadblock
           [Drosophila melanogaster] gi|7302786|gb|AAF57861.1|
           CG10751-PA [Drosophila melanogaster]
           gi|17946350|gb|AAL49209.1| RE64145p [Drosophila
           melanogaster]
          Length = 97

 Score =  118 bits (295), Expect = 2e-25
 Identities = 56/93 (60%), Positives = 74/93 (79%)
 Frame = +3

Query: 84  DIESTLTRIQGHKGVIGVIIVNNQGVPLRSTFEHDAMTKQYADLVPGLADLARNLVRDLD 263
           ++E TL RIQ HKGV+G I+VNN+G+P++ST ++   T QYA L+  LAD AR++VRDLD
Sbjct: 4   EVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTT-TVQYAGLMSQLADKARSVVRDLD 62

Query: 264 PQNDLEFLRIRSHKHEIMVAAKDDFVLLVIQDP 362
           P ND+ FLR+RS KHEIMVA   DF+L+VIQ+P
Sbjct: 63  PSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNP 95

>ref|XP_311643.1| ENSANGP00000015035 [Anopheles gambiae] gi|31210591|ref|XP_314262.1|
           ENSANGP00000018736 [Anopheles gambiae]
           gi|30176590|gb|EAA09669.2| ENSANGP00000018736 [Anopheles
           gambiae str. PEST] gi|30177613|gb|EAA07371.2|
           ENSANGP00000015035 [Anopheles gambiae str. PEST]
          Length = 96

 Score =  117 bits (294), Expect = 3e-25
 Identities = 56/93 (60%), Positives = 75/93 (80%)
 Frame = +3

Query: 84  DIESTLTRIQGHKGVIGVIIVNNQGVPLRSTFEHDAMTKQYADLVPGLADLARNLVRDLD 263
           ++E TL RIQ HKGV+G I+VNN+G+P++ST ++ + T QYA L+  L+D AR++VRDLD
Sbjct: 3   EVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTS-TVQYAGLMSQLSDKARSVVRDLD 61

Query: 264 PQNDLEFLRIRSHKHEIMVAAKDDFVLLVIQDP 362
           P NDL FLR+RS KHEIMVA   DF+L+VIQ+P
Sbjct: 62  PSNDLSFLRVRSKKHEIMVAPDKDFLLIVIQNP 94

>dbj|BAB85843.1| roadblock-related dynein light chain [Ciona intestinalis]
          Length = 96

 Score =  109 bits (272), Expect = 1e-22
 Identities = 51/96 (53%), Positives = 75/96 (78%)
 Frame = +3

Query: 78  MSDIESTLTRIQGHKGVIGVIIVNNQGVPLRSTFEHDAMTKQYADLVPGLADLARNLVRD 257
           MS++E T+ RIQ HKGV+G+I+VN++G+P+ ++ ++   T QYA L+  L   AR+ VRD
Sbjct: 1   MSEVEETIKRIQSHKGVLGIIVVNSEGIPILTSLDNST-TVQYAGLIHQLTMKARSTVRD 59

Query: 258 LDPQNDLEFLRIRSHKHEIMVAAKDDFVLLVIQDPN 365
           +DPQNDL FLR+RS KHEIMVA   +++L+VIQ+P+
Sbjct: 60  IDPQNDLTFLRLRSKKHEIMVAPDKEYLLIVIQNPS 95

>ref|NP_570967.1| dynein, cytoplasmic, light polypeptide 2B; dynein light chain 2B;
           bithoraxoid-like protein; roadblock/LC7-like [Homo
           sapiens] gi|30172886|sp|Q8TF09|DL2B_HUMAN Dynein light
           chain 2B, cytoplasmic
           gi|18568113|gb|AAL75945.1|AF125108_1 bithoraxoid-like
           protein [Homo sapiens]
          Length = 96

 Score =  108 bits (271), Expect = 1e-22
 Identities = 53/95 (55%), Positives = 73/95 (76%)
 Frame = +3

Query: 78  MSDIESTLTRIQGHKGVIGVIIVNNQGVPLRSTFEHDAMTKQYADLVPGLADLARNLVRD 257
           M+++E TL RIQ HKGVIG ++VN +G+P+R+T ++   T QYA L+  L   A++ VRD
Sbjct: 1   MAEVEETLKRIQSHKGVIGTMVVNAEGIPIRTTLDNST-TVQYAGLLHHLTMKAKSTVRD 59

Query: 258 LDPQNDLEFLRIRSHKHEIMVAAKDDFVLLVIQDP 362
           +DPQNDL FLRIRS KHEIMVA   +++L+VIQ+P
Sbjct: 60  IDPQNDLTFLRIRSKKHEIMVAPDKEYLLIVIQNP 94



EST assemble image


clone accession position
1 MX213f09_r BP089775 1 463
2 CM012h11_r AV387124 1 553
3 MX009g03_r BP086477 1 466
4 MX039a07_r BP087611 1 447
5 CM092a07_r AV392687 5 486
6 LC008f10_r AV619465 9 537
7 LC009d01_r AV619513 22 541
8 MX211b02_r BP089635 25 426
9 MX015c08_r BP086721 57 462
10 CL23b06_r AV394486 361 882
11 MX242e07_r BP091676 669 1189
12 LC023b06_r AV620515 678 1190




Chlamydomonas reinhardtii
Kazusa DNA Research Institute