KCC000357A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000357A_C01 KCC000357A_c01
CAAACTTGCTTCATGGTGACACATAATTTCTATAACTGACCGCTGGCCGCGAAGTCCAGC
TCTTGGGAGGCAAGGCAGGGGCACAGAGGCCCTTTGGGCAAGGACTGCATTTTAGCTTGA
GCTGTACTTCAAGAATGTTCTCATTCCTTGGTTGTTAAGGGAGCAGCCAGTATGAGTCGT
GCGGAGCGGAGACAGGCTGCAGAGAAGGCTCAGAGGCTCTAAAACGTAAATGAGTTATTT
TGTGCCGACCCGATTTGTATGGCGATTCGGAGGACGTCAGGTCCACCTATGTGGTTCCTT
CACCCGCTGGGTCGAGACTGTACCGATGGCACCCGTGGACGGCTCTCCTGGGTTGTTTGC
AGTAGTCGTGCACCTGCCTCCCGGGTATCATCAGTATAAGTTCATTGTAGACGGCAGGTG
GCGGCACGACGAGACCGCCCCGTTTATGCCAGACCCGCTTGGCAACGTCAACAACTGGCT
CTTTGTCCGGAGAATAGATCCTTCTCCAACACCCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000357A_C01 KCC000357A_c01
         (516 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_563834.1| protein kinase, putative [Arabidopsis thaliana]...   111  5e-24
gb|AAP21389.1| putative protein kinase AKINbetagamma [Oryza sati...   107  1e-22
gb|AAO61673.1| AKIN betagamma [Medicago truncatula]                   106  2e-22
gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]    101  5e-21
gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]    100  1e-20

>ref|NP_563834.1| protein kinase, putative [Arabidopsis thaliana]
           gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11
           [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1|
           At1g09020/F7G19_11 [Arabidopsis thaliana]
          Length = 487

 Score =  111 bits (278), Expect = 5e-24
 Identities = 51/88 (57%), Positives = 62/88 (69%)
 Frame = +2

Query: 245 PTRFVWRFGGRQVHLCGSFTRWVETVPMAPVDGSPGLFAVVVHLPPGYHQYKFIVDGRWR 424
           PTRFVW +GGR+V L GSFTRW E VPM+P++G P +F V+ +L PGYHQYKF VDG WR
Sbjct: 22  PTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWR 81

Query: 425 HDETAPFMPDPLGNVNNWLFVRRIDPSP 508
           HDE  PF+    G V N +F+   D  P
Sbjct: 82  HDEHQPFVSGN-GGVVNTIFITGPDMVP 108

>gb|AAP21389.1| putative protein kinase AKINbetagamma [Oryza sativa (japonica
           cultivar-group)]
          Length = 493

 Score =  107 bits (266), Expect = 1e-22
 Identities = 47/86 (54%), Positives = 57/86 (65%)
 Frame = +2

Query: 242 VPTRFVWRFGGRQVHLCGSFTRWVETVPMAPVDGSPGLFAVVVHLPPGYHQYKFIVDGRW 421
           VPTRFVW +GG++V+L GSFTRW E +PM+PV+G P +F  +  L PG HQYKF VDG W
Sbjct: 22  VPTRFVWPYGGKRVYLTGSFTRWTEHLPMSPVEGCPTVFQAICSLSPGIHQYKFCVDGEW 81

Query: 422 RHDETAPFMPDPLGNVNNWLFVRRID 499
           RHDE  P +    G VN     R  D
Sbjct: 82  RHDERQPTITGDYGVVNTLCLTRDFD 107

>gb|AAO61673.1| AKIN betagamma [Medicago truncatula]
          Length = 485

 Score =  106 bits (265), Expect = 2e-22
 Identities = 47/89 (52%), Positives = 61/89 (67%)
 Frame = +2

Query: 242 VPTRFVWRFGGRQVHLCGSFTRWVETVPMAPVDGSPGLFAVVVHLPPGYHQYKFIVDGRW 421
           +P RFVW +GG +V+L GSFTRW E +PM+P++G P +F V+  L PGYHQ+KF VDG+W
Sbjct: 25  IPKRFVWPYGGTRVYLIGSFTRWSEHIPMSPMEGCPSVFQVICSLMPGYHQFKFNVDGQW 84

Query: 422 RHDETAPFMPDPLGNVNNWLFVRRIDPSP 508
           R+DE  PF+    G VN    VR  D  P
Sbjct: 85  RYDEQQPFVNGNYGIVNTIYLVREPDILP 113

>gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]
          Length = 496

 Score =  101 bits (252), Expect = 5e-21
 Identities = 43/83 (51%), Positives = 55/83 (65%)
 Frame = +2

Query: 242 VPTRFVWRFGGRQVHLCGSFTRWVETVPMAPVDGSPGLFAVVVHLPPGYHQYKFIVDGRW 421
           VPTRFVW +GG++V + GSFTRW E +PM+P++G P +F  +  L PG H+YKF VDG W
Sbjct: 24  VPTRFVWPYGGKRVFVSGSFTRWSEHLPMSPIEGCPTVFQAICSLSPGIHEYKFFVDGEW 83

Query: 422 RHDETAPFMPDPLGNVNNWLFVR 490
           RHDE  P +    G VN     R
Sbjct: 84  RHDERQPTISGEFGIVNTLYLTR 106

>gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]
          Length = 497

 Score =  100 bits (248), Expect = 1e-20
 Identities = 43/86 (50%), Positives = 55/86 (63%)
 Frame = +2

Query: 242 VPTRFVWRFGGRQVHLCGSFTRWVETVPMAPVDGSPGLFAVVVHLPPGYHQYKFIVDGRW 421
           VP RFVW +GG++V + GSFTRW E +PM+PV+G P +F  +  L PG H+YKF VDG W
Sbjct: 25  VPARFVWPYGGKRVFVSGSFTRWSEHLPMSPVEGCPTVFQAICSLSPGIHEYKFYVDGEW 84

Query: 422 RHDETAPFMPDPLGNVNNWLFVRRID 499
           RHDE  P +    G VN     R  +
Sbjct: 85  RHDERQPTISGEFGIVNTLYLTREFN 110



EST assemble image


clone accession position
1 HCL069f05_r AV643436 1 395
2 HCL076a05_r AV643785 1 408
3 HCL031f01_r AV641322 1 342
4 HCL060c08_r AV642907 1 510
5 MXL031a06_r BP094848 5 394
6 HCL061e01_r AV642973 12 452
7 HCL012d08_r AV640220 19 195
8 HCL015h09_r AV640420 31 305
9 HCL052d08_r AV642471 32 501
10 HCL028d11_r AV641142 35 518
11 CL21f07_r AV394347 38 511
12 LCL041b10_r AV628399 165 493




Chlamydomonas reinhardtii
Kazusa DNA Research Institute