Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000290A_C01 KCC000290A_c01
(1061 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Vol... 256 4e-67
gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas... 88 6e-54
gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precurs... 84 3e-41
pir||S31863 chlorophyll a/b-binding protein type 4, photosystem ... 75 3e-40
pir||S31864 chlorophyll a/b-binding protein type 4, photosystem ... 75 3e-40
>gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 256 bits (655), Expect = 4e-67
Identities = 143/248 (57%), Positives = 162/248 (64%), Gaps = 4/248 (1%)
Frame = +1
Query: 31 MALTMKRSGVAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLG 210
MAL MKRS VAAR A SRK+VVTCVARQSWLPGS+IP HLD+PAA A+AGNFGFDPLGLG
Sbjct: 1 MALMMKRSAVAARPAVSRKAVVTCVARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLG 60
Query: 211 KDPVALRWYQQAELIHCRTAMAGVAGILIPGLLTKGWA---P*TCLSGTTPARWR-SRTR 378
KD ALRWYQQAEL+H RTAM VAGILIPGLLTK A P +G +
Sbjct: 61 KDAEALRWYQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFG 120
Query: 379 SLPGALCWLCSCSCAASWRPSAGRTSASPAASASLARSCASRRP*RAPRSWATPAAPSTP 558
+L +L A W + P + A P P
Sbjct: 121 ALLAVQLFLTGFVEAKRW-----QDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDP 175
Query: 559 LACPREADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYAT 738
L ++ADK ADWKLKE+KNGRLAM+AFLGF AQK+ATG GP+DNLAAHL DPWHVNYA+
Sbjct: 176 LGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVNYAS 235
Query: 739 NGVSLPFL 762
NGVS+PFL
Sbjct: 236 NGVSVPFL 243
Score = 141 bits (355), Expect = 2e-32
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = +3
Query: 321 GALNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQDIRKPGSQCEPGSFLCF 500
GALNVPEWYDAGKVAIE+SFAP+G+LLAVQLFL GFVEAKRWQD +KPGSQ E GSFL F
Sbjct: 97 GALNVPEWYDAGKVAIESSFAPFGALLAVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGF 156
Query: 501 EASLKGTSELGYPGGPFDPLGLSK 572
E + GT + GYPGG FDPLGLSK
Sbjct: 157 ETAFAGTGDNGYPGGIFDPLGLSK 180
>gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 87.8 bits (216), Expect(3) = 6e-54
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +3
Query: 327 LNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQDIRKPGSQCEPGSFLCFEA 506
L PEWYDAGKV +E + + +L+ +Q +L G+ E KRW D + PGSQ + GSFL F
Sbjct: 97 LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGSQAD-GSFLGFTE 155
Query: 507 SLKGTSELGYPGGP-FDPLGLSKG 575
KG E GYPGG FDP+GLS+G
Sbjct: 156 EFKGL-ENGYPGGRFFDPMGLSRG 178
Score = 87.8 bits (216), Expect(3) = 6e-54
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +1
Query: 574 EADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYATNGVSL 753
+A K+ ++K KEVKNGRLAM+A LGF AQ ATG GP+DNLA HL DP HVN+ATNGVS+
Sbjct: 179 DAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATNGVSI 238
Query: 754 P 756
P
Sbjct: 239 P 239
Score = 80.1 bits (196), Expect(3) = 6e-54
Identities = 43/98 (43%), Positives = 59/98 (59%), Gaps = 3/98 (3%)
Frame = +1
Query: 31 MALTM---KRSGVAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPL 201
MAL+M +R+G + + R R W PG+ PAHLD +LAG++GFDPL
Sbjct: 1 MALSMIAQRRAGAFSARQAPRAVRAQAAVRPVWFPGNPPPAHLD----GSLAGDYGFDPL 56
Query: 202 GLGKDPVALRWYQQAELIHCRTAMAGVAGILIPGLLTK 315
LG++P L+WY QAEL+H R AM G AGI++ + K
Sbjct: 57 FLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK 94
>gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 84.0 bits (206), Expect(3) = 3e-41
Identities = 47/88 (53%), Positives = 60/88 (67%)
Frame = +1
Query: 52 SGVAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALR 231
SG + S+R+ V A+ SWLPG Q PA+LD +LAG+ GFDPL L +DP LR
Sbjct: 11 SGRVGLAKSTRRDVAV-QAKGSWLPGLQSPAYLDG----SLAGDNGFDPLALAEDPEDLR 65
Query: 232 WYQQAELIHCRTAMAGVAGILIPGLLTK 315
W+ QAEL++ R AM GVAG+LIP +LTK
Sbjct: 66 WFVQAELVNGRWAMLGVAGMLIPEVLTK 93
Score = 66.6 bits (161), Expect(3) = 3e-41
Identities = 35/83 (42%), Positives = 45/83 (54%)
Frame = +3
Query: 321 GALNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQDIRKPGSQCEPGSFLCF 500
G LN PEWYDAGK E FA +L ++ L +VE +RWQDI+ PGS + F +
Sbjct: 95 GLLNAPEWYDAGK---ETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY 151
Query: 501 EASLKGTSELGYPGGPFDPLGLS 569
E GYPG F+PL +
Sbjct: 152 SLP---PHECGYPGSVFNPLNFA 171
Score = 62.4 bits (150), Expect(3) = 3e-41
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +1
Query: 598 KLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWH 723
K KE+ NGRLAMLAFLGF+ Q TG GP +NL HL DPWH
Sbjct: 177 KEKELANGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWH 218
>pir||S31863 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of
light-harvesting complex of photosystem I [Pinus
sylvestris]
Length = 251
Score = 74.7 bits (182), Expect(3) = 3e-40
Identities = 37/69 (53%), Positives = 50/69 (71%)
Frame = +1
Query: 106 ARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAMAGVA 285
A+ WLPG P++L+ +L G+ GFDPLGL +DP +L+WY QAEL++ R AM GVA
Sbjct: 51 AKGEWLPGLSSPSYLNG----SLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVA 106
Query: 286 GILIPGLLT 312
G+LIP +LT
Sbjct: 107 GMLIPEVLT 115
Score = 69.3 bits (168), Expect(3) = 3e-40
Identities = 36/84 (42%), Positives = 50/84 (58%)
Frame = +3
Query: 318 LGALNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQDIRKPGSQCEPGSFLC 497
+G +NVP+WYDAGKV FA +L ++ L +VE +RWQDI+ PGS + F
Sbjct: 117 IGLINVPKWYDAGKVEY---FASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQ 173
Query: 498 FEASLKGTSELGYPGGPFDPLGLS 569
+ +E+GYPGG F+PL S
Sbjct: 174 YSLP---PNEVGYPGGIFNPLNFS 194
Score = 65.5 bits (158), Expect(3) = 3e-40
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +1
Query: 598 KLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWH 723
K KE+ NGRLAMLAFLGFV Q TG GP DNL HL DPWH
Sbjct: 200 KEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWH 241
>pir||S31864 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
(fragment) gi|829287|emb|CAA78901.1| Lhca4 protein,Type
4 protein of light-harvesting complex of photosystem I
[Pinus sylvestris]
Length = 244
Score = 74.7 bits (182), Expect(3) = 3e-40
Identities = 37/69 (53%), Positives = 50/69 (71%)
Frame = +1
Query: 106 ARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAMAGVA 285
A+ WLPG P++L+ +L G+ GFDPLGL +DP +L+WY QAEL++ R AM GVA
Sbjct: 44 AKGEWLPGLSSPSYLNG----SLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVA 99
Query: 286 GILIPGLLT 312
G+LIP +LT
Sbjct: 100 GMLIPEVLT 108
Score = 69.3 bits (168), Expect(3) = 3e-40
Identities = 36/84 (42%), Positives = 50/84 (58%)
Frame = +3
Query: 318 LGALNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQDIRKPGSQCEPGSFLC 497
+G +NVP+WYDAGKV FA +L ++ L +VE +RWQDI+ PGS + F
Sbjct: 110 IGLINVPKWYDAGKVEY---FASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQ 166
Query: 498 FEASLKGTSELGYPGGPFDPLGLS 569
+ +E+GYPGG F+PL S
Sbjct: 167 YSLP---PNEVGYPGGIFNPLNFS 187
Score = 65.5 bits (158), Expect(3) = 3e-40
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +1
Query: 598 KLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWH 723
K KE+ NGRLAMLAFLGFV Q TG GP DNL HL DPWH
Sbjct: 193 KEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWH 234
