Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000282A_C01 KCC000282A_c01
(198 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_498711.1| tyrosinase and metridin-like ShK toxin family m... 33 0.96
pir||S44739 C02C2.1 protein - Caenorhabditis elegans 33 0.96
ref|NP_571169.1| human E12 homolog [Danio rerio] gi|2118448|pir|... 31 4.8
>ref|NP_498711.1| tyrosinase and metridin-like ShK toxin family member (68.4 kD)
(3I965) [Caenorhabditis elegans]
gi|21903491|sp|P34269|YKH1_CAEEL Hypothetical
tyrosinase-like protein C02C2.1 in chromosome III
gi|14625116|gb|AAA27909.2| Hypothetical protein C02C2.1
[Caenorhabditis elegans]
Length = 601
Score = 33.5 bits (75), Expect = 0.96
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 186 TRRTRWMGCSCQALQAPWCNPSNAIYLTGSYRCSQLIGSAARCWCFSSDA 37
TRR +WM +CQA WCN + A R S+ + A+ W DA
Sbjct: 540 TRRRQWMAENCQA-TCGWCNMNEAQLCASVARQSRRVRRNAKFWLTEPDA 588
>pir||S44739 C02C2.1 protein - Caenorhabditis elegans
Length = 484
Score = 33.5 bits (75), Expect = 0.96
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 186 TRRTRWMGCSCQALQAPWCNPSNAIYLTGSYRCSQLIGSAARCWCFSSDA 37
TRR +WM +CQA WCN + A R S+ + A+ W DA
Sbjct: 423 TRRRQWMAENCQA-TCGWCNMNEAQLCASVARQSRRVRRNAKFWLTEPDA 471
>ref|NP_571169.1| human E12 homolog [Danio rerio] gi|2118448|pir||I50518 DNA binding
protein E12 - zebra fish gi|509754|emb|CAA54305.1| DNA
binding protein E12 [Danio rerio]
Length = 583
Score = 31.2 bits (69), Expect = 4.8
Identities = 15/49 (30%), Positives = 27/49 (54%)
Frame = +3
Query: 45 N*NTSSGLLSRSAANIYNSQSDRSHYSGCTMAPVGLDTSSPSSGSSWFK 191
N +S + ++ A+IY S ++ S++S PVG ++ +S S W K
Sbjct: 259 NAGSSGAEIGKALASIYPSDNNGSNFSSTPSTPVGSPSNVAASASQWPK 307
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,834,172
Number of Sequences: 1537769
Number of extensions: 3193768
Number of successful extensions: 8445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8445
length of database: 498,525,298
effective HSP length: 41
effective length of database: 435,476,769
effective search space used: 10451442456
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
