KCC000278A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000278A_C01 KCC000278A_c01
gccgcatcgccagggagatcgacgccggcgagtacgactacgccattgccttccaggagc
gcatccgcatccccgacgacAAGATGAAGTACTATGAGAACCTGGCTGAGATGTACGTGG
GTGACGACGTGTCCCCCGACTTCTACGGCTGGGTGTTCCCCAAGTACGACCACGTCGCGG
TCGGCACCGGCACCGTGGTCAACAAGACCGCCATCAAGCAGTACCAGCAGGCCACCCGTG
ACCGCTCCAAGGTCAAGACCGAGGGCGGCAAGATCATCCGTGTGGAGGCACACCCCATCC
CCGAGCACCCCCGCCCCCGCCGCTGCAAGGGCCGTGTTGCCCTGGTCGGCGACGCTGCCG
GCTACGTGACCAAGTGCTCGGGTGAGGGCATCTACTTCGCCGCCAAGTCGGGCCGCATGG
CCGCCGAGGCTATTGTGGAGGGCTCCGCCAACGGCACCAAGATGTGCGGCGAGGACGCCA
TCCGCGTCTACCTGGACAAGTGGGACCGCAAGTACTGGACCACCTACAAGGTGCTGGACA
TCCTGCAGAAGGTGTTCTACCGCTCCAACCCTGCCCGCGAGGCCTTCGTGGAGCTGTGCG
AGGACAGCTACGTGCAGAAGATGACCTTCGACTCGTACCTGTACAAGACCGTGGTGCCCG
GCAACCCCCTGGACGACGTCAAGCTGCTGGTGCGCACCGTGTCTTCCATCCTGCGCTCCA
ACGCCCTGCGCAGCGTCAACTCCAAGTCGGTGAACGTGTCGTTCGGCTCCAAGGCGAACG
AGGAGCGCGTCATGGCTGCGTAAGCGGCTTTACGGGAGTGCTCGTTCTGATGGCAGCGCT
GTCGCTTCAGCTTCAGCCGTCAGCTGGTCCGATATGGGCTGCAGCAGTTTTGCGGATTCG
GTTGCGGCAGCAGCAGCGACAGGAGTGGACTGAGGAGGGAGCAGCGTGATTAGGGCTGGA
AATGCTCTTCAATGCATCTGCGATCTCGGACGTTTCCCTCTCGCCAGCCTCAAATCTGTG
TGTATGTGCGGCTGCTCCCCATTGGCTTGGCTAGGCCTCGGCGGCTGACGCTGGGGCACC
GGCACGCCGCAATTTTTAAGTACCAGCGGCGTCCCGGCGCCTGGATTTGCGGCATGGACG
AGGAGGGGCGAGTGTAGCGTTTACAGCAGGCTAGGCGTTTGAAGCGATCTGGTCGGCAGT
GACAGTTGTCCGCGTGTGTTGTGTTTCACTAATTGACTCGGCATTATTTTCTCCCCGCAA
TGTGGGTGCATGGCTGGATCTCGCCATGTGTGCTGCATTGGTTGCTGCCCGTGCGTGCCC
CGCCGCTGTCGTGTGTTGGGCGGGCGGCCGGCAGCGGCAGGAAGACCGGTGCTCCAAATG
GACCATGGGAAGTGTGATGGATCGTGCATCGTTGGGTGCTCGTGGCGACGTGAAGATGAC
CGTGACCTTGTGATAGAGAGTTTAGAGACTACCAAGAAAGGAAGAATACTCTTCCTCCAC
GCGCAGCGGGAGTGTTTGTTGGAGGGGAGCCGGACGGCTCCTCCCGAGTGGTGTGGTGTG
AGTGTTTGGAATGCGTTCGGCTCGGATGGCGACAGGAGGATAATTATCTCGTGGAACGAG
CCTCGCAGATACGGATGGCCTTCCCGAGATCGGAAGTGAGCACCCAGTGTGCTGAAGTGA
GAAGACACCCCCAAATTAGGGCTCGAACAGAGCCAGCAGGGCGCCGCGCCTCCCACGTGC
CTCGGCGATCCCGTGTAAATAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000278A_C01 KCC000278A_c01
         (1762 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]               402  e-110
pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice...   399  e-110
ref|NP_177587.1| geranylgeranyl reductase [Arabidopsis thaliana]...   393  e-108
gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis th...   393  e-108
emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]       393  e-108

>gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]
          Length = 462

 Score =  402 bits (1033), Expect = e-110
 Identities = 192/248 (77%), Positives = 217/248 (87%)
 Frame = +3

Query: 3   RIAREIDAGEYDYAIAFQERIRIPDDKMKYYENLAEMYVGDDVSPDFYGWVFPKYDHVAV 182
           R+A+ IDAG+Y+YAIAFQER++IPDDKM YYENLAEMYVGDDVSPDFYGWVFPK DHVAV
Sbjct: 212 RVAKSIDAGDYEYAIAFQERVKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAV 271

Query: 183 GTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEHPRPRRCKGRVALVGDAAG 362
           GTGTV +K  IK++Q ATR R++ K  GGKIIRVEAHPIPEHPRPRR  GRVALVGDAAG
Sbjct: 272 GTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAG 331

Query: 363 YVTKCSGEGIYFAAKSGRMAAEAIVEGSANGTKMCGEDAIRVYLDKWDRKYWTTYKVLDI 542
           YVTKCSGEGIYFAAKSGRM AEAIVEGS NG +M  E  +R YL+KWD+ YW TYKVLDI
Sbjct: 332 YVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDI 391

Query: 543 LQKVFYRSNPAREAFVELCEDSYVQKMTFDSYLYKTVVPGNPLDDVKLLVRTVSSILRSN 722
           LQKVFYRSNPAREAFVE+C D YVQKMTFDSYLYKTVVPGNPL+D+KL + T+ S++R+N
Sbjct: 392 LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRAN 451

Query: 723 ALRSVNSK 746
           A+R   +K
Sbjct: 452 AIRREMNK 459

>pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice plant
           gi|3202030|gb|AAC19396.1| geranylgeranyl hydrogenase
           [Mesembryanthemum crystallinum]
          Length = 466

 Score =  399 bits (1025), Expect = e-110
 Identities = 192/243 (79%), Positives = 215/243 (88%)
 Frame = +3

Query: 3   RIAREIDAGEYDYAIAFQERIRIPDDKMKYYENLAEMYVGDDVSPDFYGWVFPKYDHVAV 182
           R+A+ I AG+Y+YAIAFQERI+IPD KM+YYE+LAEMYVGDDVSPDFYGWVFPK DHVAV
Sbjct: 216 RVAKAIGAGDYEYAIAFQERIKIPDAKMQYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAV 275

Query: 183 GTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEHPRPRRCKGRVALVGDAAG 362
           GTGTV +K+ IK++Q ATR R+  K +GGKIIRVEAHPIPEHPRP+R   RVALVGDAAG
Sbjct: 276 GTGTVTHKSDIKKFQLATRTRAMDKIQGGKIIRVEAHPIPEHPRPKRVLDRVALVGDAAG 335

Query: 363 YVTKCSGEGIYFAAKSGRMAAEAIVEGSANGTKMCGEDAIRVYLDKWDRKYWTTYKVLDI 542
           YVTKCSGEGIYFAAKSGRM AEAIVEGSANG +M  E  +R YL+KWD+KYW TYKVLDI
Sbjct: 336 YVTKCSGEGIYFAAKSGRMCAEAIVEGSANGKRMVDESDLRKYLEKWDKKYWPTYKVLDI 395

Query: 543 LQKVFYRSNPAREAFVELCEDSYVQKMTFDSYLYKTVVPGNPLDDVKLLVRTVSSILRSN 722
           LQKVFYRSNPAREAFVE+C D YVQKMTFDSYLYKTVVPGNPLDD+KL VRTV S++R+ 
Sbjct: 396 LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLDDLKLAVRTVGSLVRAY 455

Query: 723 ALR 731
            LR
Sbjct: 456 GLR 458

>ref|NP_177587.1| geranylgeranyl reductase [Arabidopsis thaliana]
           gi|25326665|pir||F96773 geranylgeranyl reductase,
           47568-49165 [imported] - Arabidopsis thaliana
           gi|12324810|gb|AAG52372.1|AC011765_24 geranylgeranyl
           reductase; 47568-49165 [Arabidopsis thaliana]
           gi|15292919|gb|AAK92830.1| putative geranylgeranyl
           reductase [Arabidopsis thaliana]
           gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15
           [Arabidopsis thaliana] gi|16648981|gb|AAL24342.1|
           geranylgeranyl reductase [Arabidopsis thaliana]
           gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15
           [Arabidopsis thaliana] gi|20259041|gb|AAM14236.1|
           putative geranylgeranyl reductase [Arabidopsis thaliana]
           gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15
           [Arabidopsis thaliana] gi|23397186|gb|AAN31876.1|
           putative geranylgeranyl reductase [Arabidopsis thaliana]
           gi|27311931|gb|AAO00931.1| geranylgeranyl reductase
           [Arabidopsis thaliana]
          Length = 467

 Score =  393 bits (1010), Expect = e-108
 Identities = 189/243 (77%), Positives = 212/243 (86%)
 Frame = +3

Query: 3   RIAREIDAGEYDYAIAFQERIRIPDDKMKYYENLAEMYVGDDVSPDFYGWVFPKYDHVAV 182
           R+A+ IDAG+YDYAIAFQERIRIPD+KM YYE+LAEMYVGDDVSPDFYGWVFPK DHVAV
Sbjct: 217 RVAKSIDAGDYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAV 276

Query: 183 GTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEHPRPRRCKGRVALVGDAAG 362
           GTGTV +K  IK++Q ATR+R+K K  GGKIIRVEAHPIPEHPRPRR   RVALVGDAAG
Sbjct: 277 GTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAG 336

Query: 363 YVTKCSGEGIYFAAKSGRMAAEAIVEGSANGTKMCGEDAIRVYLDKWDRKYWTTYKVLDI 542
           YVTKCSGEGIYFAAKSGRM AEAIVEGS NG KM  E  +R YL+KWD+ Y  TY+VLD+
Sbjct: 337 YVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDV 396

Query: 543 LQKVFYRSNPAREAFVELCEDSYVQKMTFDSYLYKTVVPGNPLDDVKLLVRTVSSILRSN 722
           LQKVFYRSNPAREAFVE+C D YVQKMTFDSYLYK V PG+PL+D+KL V T+ S++R+N
Sbjct: 397 LQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRAN 456

Query: 723 ALR 731
           ALR
Sbjct: 457 ALR 459

>gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis thaliana]
          Length = 467

 Score =  393 bits (1010), Expect = e-108
 Identities = 189/243 (77%), Positives = 212/243 (86%)
 Frame = +3

Query: 3   RIAREIDAGEYDYAIAFQERIRIPDDKMKYYENLAEMYVGDDVSPDFYGWVFPKYDHVAV 182
           R+A+ IDAG+YDYAIAFQERIRIPD+KM YYE+LAEMYVGDDVSPDFYGWVFPK DHVAV
Sbjct: 217 RVAKSIDAGDYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAV 276

Query: 183 GTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEHPRPRRCKGRVALVGDAAG 362
           GTGTV +K  IK++Q ATR+R+K K  GGKIIRVEAHPIPEHPRPRR   RVALVGDAAG
Sbjct: 277 GTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAG 336

Query: 363 YVTKCSGEGIYFAAKSGRMAAEAIVEGSANGTKMCGEDAIRVYLDKWDRKYWTTYKVLDI 542
           YVTKCSGEGIYFAAKSGRM AEAIVEGS NG KM  E  +R YL+KWD+ Y  TY+VLD+
Sbjct: 337 YVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDV 396

Query: 543 LQKVFYRSNPAREAFVELCEDSYVQKMTFDSYLYKTVVPGNPLDDVKLLVRTVSSILRSN 722
           LQKVFYRSNPAREAFVE+C D YVQKMTFDSYLYK V PG+PL+D+KL V T+ S++R+N
Sbjct: 397 LQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRAN 456

Query: 723 ALR 731
           ALR
Sbjct: 457 ALR 459

>emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
          Length = 472

 Score =  393 bits (1010), Expect = e-108
 Identities = 189/243 (77%), Positives = 212/243 (86%)
 Frame = +3

Query: 3   RIAREIDAGEYDYAIAFQERIRIPDDKMKYYENLAEMYVGDDVSPDFYGWVFPKYDHVAV 182
           R+A+ IDAG+YDYAIAFQERIRIPD+KM YYE+LAEMYVGDDVSPDFYGWVFPK DHVAV
Sbjct: 222 RVAKSIDAGDYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAV 281

Query: 183 GTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEHPRPRRCKGRVALVGDAAG 362
           GTGTV +K  IK++Q ATR+R+K K  GGKIIRVEAHPIPEHPRPRR   RVALVGDAAG
Sbjct: 282 GTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAG 341

Query: 363 YVTKCSGEGIYFAAKSGRMAAEAIVEGSANGTKMCGEDAIRVYLDKWDRKYWTTYKVLDI 542
           YVTKCSGEGIYFAAKSGRM AEAIVEGS NG KM  E  +R YL+KWD+ Y  TY+VLD+
Sbjct: 342 YVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDV 401

Query: 543 LQKVFYRSNPAREAFVELCEDSYVQKMTFDSYLYKTVVPGNPLDDVKLLVRTVSSILRSN 722
           LQKVFYRSNPAREAFVE+C D YVQKMTFDSYLYK V PG+PL+D+KL V T+ S++R+N
Sbjct: 402 LQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRAN 461

Query: 723 ALR 731
           ALR
Sbjct: 462 ALR 464



EST assemble image


clone accession position
1 CM014d08_r AV387404 1 584
2 CM057a11_r AV390458 93 253
3 LCL087d10_r AV630999 112 635
4 HC016a08_r AV633047 117 603
5 CM056c09_r AV390321 219 824
6 HC014a04_r AV632890 233 720
7 CM004a07_r AV386643 266 807
8 LC082b07_r AV624753 289 771
9 MX049d03_r BP088009 300 645
10 MX041g11_r BP087704 300 741
11 MX064b07_r BP088580 453 790
12 HC070b10_r AV637208 453 900
13 LC097a09_r AV625726 524 844
14 MXL082a04_r BP097827 557 997
15 CM053f08_r AV389952 657 1208
16 LC022g09_r AV620485 757 1263
17 LC088c12_r AV625134 774 1295
18 LC031a01_r AV621082 907 1447
19 LCL025h02_r AV627376 1103 1582
20 CL16a09_r AV393997 1127 1593
21 CM072h06_r AV391471 1255 1758
22 CL20c06_r AV394300 1256 1767




Chlamydomonas reinhardtii
Kazusa DNA Research Institute