Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000275A_C01 KCC000275A_c01
(528 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180895.1| 60S ribosomal protein L23 (RPL23B) [Arabidopsis... 236 1e-61
gb|AAM67199.1| putative 60S ribosomal protein L17 [Arabidopsis t... 235 2e-61
gb|AAK27802.1|AC022457_5 60S ribosomal protein L17 [Oryza sativa... 235 2e-61
pir||B86177 hypothetical protein [imported] - Arabidopsis thalia... 234 5e-61
gb|AAP80667.1|AF479048_1 ribosomal Pr 117 [Triticum aestivum] 234 7e-61
>ref|NP_180895.1| 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana]
gi|15229287|ref|NP_187090.1| 60S ribosomal protein L23
(RPL23C) [Arabidopsis thaliana]
gi|18390397|ref|NP_563707.1| 60S ribosomal protein L23
(RPL23A) [Arabidopsis thaliana]
gi|19884121|sp|P49690|RL23_ARATH 60S ribosomal protein
L23 gi|25295197|pir||F84744 60S ribosomal protein L23
[imported] - Arabidopsis thaliana
gi|2459420|gb|AAB80655.1| 60S ribosomal protein L23
[Arabidopsis thaliana] gi|7547099|gb|AAF63771.1|
ribosomal protein L17, putative [Arabidopsis thaliana]
gi|14596111|gb|AAK68783.1| 60S ribosomal protein L17
[Arabidopsis thaliana] gi|15450856|gb|AAK96699.1| Strong
similarity to 60S ribosomal protein L17 [Arabidopsis
thaliana] gi|18377460|gb|AAL66896.1| unknown protein
[Arabidopsis thaliana] gi|20148697|gb|AAM10239.1|
similar to 60S ribosomal protein L17 [Arabidopsis
thaliana] gi|21555625|gb|AAM63901.1| putative 60S
ribosomal protein L17 [Arabidopsis thaliana]
gi|21593801|gb|AAM65768.1| putative 60S ribosomal
protein L17 [Arabidopsis thaliana]
Length = 140
Score = 236 bits (603), Expect = 1e-61
Identities = 112/140 (80%), Positives = 129/140 (92%)
Frame = +3
Query: 6 MANKRKGGTSGNKFRMALGLPVAAVMNCADNTGAKNLYVISVVGWGSRLNKLPAAACGDM 185
M+ + +GGTSGNKFRM+LGLPVAA +NCADNTGAKNLY+ISV G RLN+LP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 186 VMASVKKGKPDLRKKVTPAVVIRQRKPFRRKEGVYIYFEDNAGVIVNPKGEMKGSAITGP 365
VMA+VKKGKPDLRKKV PAV++RQRKP+RRK+GV++YFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 366 VAKECADLWPRIASAANSIV 425
+ KECADLWPRIASAAN+IV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>gb|AAM67199.1| putative 60S ribosomal protein L17 [Arabidopsis thaliana]
Length = 140
Score = 235 bits (600), Expect = 2e-61
Identities = 111/140 (79%), Positives = 129/140 (91%)
Frame = +3
Query: 6 MANKRKGGTSGNKFRMALGLPVAAVMNCADNTGAKNLYVISVVGWGSRLNKLPAAACGDM 185
M+ + +GGTSGNKFRM+LGLPVAA +NCADNTGAKNLY+ISV G RLN+LP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 186 VMASVKKGKPDLRKKVTPAVVIRQRKPFRRKEGVYIYFEDNAGVIVNPKGEMKGSAITGP 365
VMA+VKKGKPDLRKKV PAV++RQRKP+RRK+GV++YFEDNAGVIVNPKG+MKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGDMKGSAITGP 120
Query: 366 VAKECADLWPRIASAANSIV 425
+ KECADLWPRIASAAN+IV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>gb|AAK27802.1|AC022457_5 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)]
gi|31432581|gb|AAP54196.1| 60S ribosomal protein L17
[Oryza sativa (japonica cultivar-group)]
Length = 140
Score = 235 bits (600), Expect = 2e-61
Identities = 111/140 (79%), Positives = 129/140 (91%)
Frame = +3
Query: 6 MANKRKGGTSGNKFRMALGLPVAAVMNCADNTGAKNLYVISVVGWGSRLNKLPAAACGDM 185
M+ + +GG++GNKFRM+LGLPVAA +NCADNTGAKNLY+ISV G RLN+LP+A GDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 186 VMASVKKGKPDLRKKVTPAVVIRQRKPFRRKEGVYIYFEDNAGVIVNPKGEMKGSAITGP 365
VMA+VKKGKPDLRKKV PAV++RQRKP+RRK+GVY+YFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 366 VAKECADLWPRIASAANSIV 425
+ KECADLWPRIASAAN+IV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>pir||B86177 hypothetical protein [imported] - Arabidopsis thaliana
gi|2341028|gb|AAB70426.1| Strong similarity to 60S
ribosomal protein L17 (gb|X01694). EST gb|AA042332 comes
from this gene. [Arabidopsis thaliana]
Length = 157
Score = 234 bits (597), Expect = 5e-61
Identities = 111/135 (82%), Positives = 126/135 (93%)
Frame = +3
Query: 21 KGGTSGNKFRMALGLPVAAVMNCADNTGAKNLYVISVVGWGSRLNKLPAAACGDMVMASV 200
+GGTSGNKFRM+LGLPVAA +NCADNTGAKNLY+ISV G RLN+LP+A GDMVMA+V
Sbjct: 23 RGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATV 82
Query: 201 KKGKPDLRKKVTPAVVIRQRKPFRRKEGVYIYFEDNAGVIVNPKGEMKGSAITGPVAKEC 380
KKGKPDLRKKV PAV++RQRKP+RRK+GV++YFEDNAGVIVNPKGEMKGSAITGP+ KEC
Sbjct: 83 KKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKEC 142
Query: 381 ADLWPRIASAANSIV 425
ADLWPRIASAAN+IV
Sbjct: 143 ADLWPRIASAANAIV 157
>gb|AAP80667.1|AF479048_1 ribosomal Pr 117 [Triticum aestivum]
Length = 147
Score = 234 bits (596), Expect = 7e-61
Identities = 110/140 (78%), Positives = 129/140 (91%)
Frame = +3
Query: 6 MANKRKGGTSGNKFRMALGLPVAAVMNCADNTGAKNLYVISVVGWGSRLNKLPAAACGDM 185
M+ + +GG++GNKFRM+LGLPVAA +NCADNTGAKNLY+ISV G RLN+LP+A GDM
Sbjct: 8 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 67
Query: 186 VMASVKKGKPDLRKKVTPAVVIRQRKPFRRKEGVYIYFEDNAGVIVNPKGEMKGSAITGP 365
VMA+VKKGKPDLRKKV PAV++RQRKP+RRK+GV++YFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 68 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 127
Query: 366 VAKECADLWPRIASAANSIV 425
+ KECADLWPRIASAAN+IV
Sbjct: 128 IGKECADLWPRIASAANAIV 147
