Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000196A_C02 KCC000196A_c02
(1580 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamy... 86 5e-20
gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Vol... 79 1e-16
pir||S60608 chlorophyll a/b-binding protein type II precursor, p... 63 5e-16
dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sa... 65 6e-16
pir||S52341 LHCI-680, photosystem I antenna protein - barley gi|... 65 2e-15
>gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 85.9 bits (211), Expect(2) = 5e-20
Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 412 YEIYKKTGETGFLSFAPFDPMGMKSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGPIET 591
Y+ +K+TG +GF++ PFDP GM S M KE+KNGRLAM+AF+GFC QA PIE
Sbjct: 127 YQGFKQTGTSGFINSFPFDPAGMNSPSMATKEVKNGRLAMVAFIGFCVQALATRTQPIEG 186
Query: 592 LQLHLADP-GHNNIYTSSVGPET 657
L HLADP G N Y + PET
Sbjct: 187 LTAHLADPFGKNITYYLTHLPET 209
Score = 35.8 bits (81), Expect(2) = 5e-20
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +2
Query: 236 AELTNGRWAMAARCRHPVHRRRVGLPKFWTAGAEKYALDNQTLALIEVAV 385
AE TNGRWAM A P +W AGA++Y + Q L IE V
Sbjct: 69 AEKTNGRWAMMAVAGILGQELLGVTPAWWEAGAKEYDIPAQALTPIEFIV 118
>gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 78.6 bits (192), Expect(2) = 1e-16
Identities = 39/73 (53%), Positives = 49/73 (66%)
Frame = +1
Query: 412 YEIYKKTGETGFLSFAPFDPMGMKSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGPIET 591
Y+ +K TG +GF++ PFDP G+ S M KE+KNGRLAM+AF+GF QA V PIE
Sbjct: 127 YQGFKTTGTSGFINSFPFDPAGLNSASMATKEVKNGRLAMVAFVGFAVQALVTRTQPIEG 186
Query: 592 LQLHLADPGHNNI 630
L HL+DP NI
Sbjct: 187 LTKHLSDPFGKNI 199
Score = 32.0 bits (71), Expect(2) = 1e-16
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 236 AELTNGRWAMAARCRHPVHRRRVGL-PKFWTAGAEKYALDNQTLALIEVAV 385
AE TNGRWAM A + + +G+ P ++ AGA++Y + + L IE V
Sbjct: 69 AEKTNGRWAMMA-VTGILGQELLGVTPSWYEAGAKEYDIPSTPLTAIEFIV 118
>pir||S60608 chlorophyll a/b-binding protein type II precursor, photosystem I -
garden pea gi|602359|emb|CAA57492.1| Type II chlorophyll
a/b binding protein from photosystem I [Pisum sativum]
Length = 269
Score = 63.2 bits (152), Expect(3) = 5e-16
Identities = 36/79 (45%), Positives = 47/79 (58%), Gaps = 7/79 (8%)
Frame = +1
Query: 424 KKTG-ETGFLSFAPFDPMG------MKSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGP 582
K TG + G+ FDP+G K +E++ KE+KNGRLAMLA +G Q G GP
Sbjct: 187 KLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 246
Query: 583 IETLQLHLADPGHNNIYTS 639
I+ L HLADPGH I+ +
Sbjct: 247 IDNLFAHLADPGHATIFAA 265
Score = 37.0 bits (84), Expect(3) = 5e-16
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +2
Query: 227 SVSAELTNGRWAM--AARCRHPVHRRRVGL---PKFWTAGAEKYALDNQTLALIEVAVFC 391
+V AEL + RWAM AA P ++G+ P ++TAG ++Y D TL ++E+
Sbjct: 102 NVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIG 161
Query: 392 RAGGQ 406
A G+
Sbjct: 162 WAEGR 166
Score = 27.7 bits (60), Expect(3) = 5e-16
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = +1
Query: 85 CA*ARRPAPMWYPGATAPGSPGLAPML-GDYVLRPPPPGAVNKDNLKW 225
C A P+W+PG+T P P L L GD+ P G+ + ++L+W
Sbjct: 57 CTVAEPDRPLWFPGSTPP--PWLDGSLPGDFGFDPLGLGS-DPESLRW 101
>dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa (japonica
cultivar-group)]
Length = 263
Score = 64.7 bits (156), Expect(3) = 6e-16
Identities = 37/77 (48%), Positives = 47/77 (60%), Gaps = 7/77 (9%)
Frame = +1
Query: 424 KKTG-ETGFLSFAPFDPMGM------KSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGP 582
K TG + G+ FDP+G K +E++ KE+KNGRLAMLA +G QA G GP
Sbjct: 181 KLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGP 240
Query: 583 IETLQLHLADPGHNNIY 633
I+ L HLADPGH I+
Sbjct: 241 IDNLFAHLADPGHATIF 257
Score = 37.4 bits (85), Expect(3) = 6e-16
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +2
Query: 227 SVSAELTNGRWAM--AARCRHPVHRRRVGL---PKFWTAGAEKYALDNQTLALIEVAVFC 391
+V AEL + RWAM AA P ++G+ P ++TAG ++Y D TL +IE+ +
Sbjct: 96 NVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQYFTDTTTLFIIELILIG 155
Query: 392 RAGGQ 406
A G+
Sbjct: 156 WAEGR 160
Score = 25.4 bits (54), Expect(3) = 6e-16
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 PMWYPGATAPGSPGLAPML-GDYVLRPPPPGAVNKDNLKW 225
P+W+PG+T P P L L GD+ P G+ + ++L+W
Sbjct: 59 PIWFPGSTPP--PWLDGSLPGDFGFDPLGLGS-DPESLRW 95
>pir||S52341 LHCI-680, photosystem I antenna protein - barley
gi|666054|emb|CAA59049.1| LHCI-680, photosystem I
antenna protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 64.7 bits (156), Expect(3) = 2e-15
Identities = 37/77 (48%), Positives = 47/77 (60%), Gaps = 7/77 (9%)
Frame = +1
Query: 424 KKTG-ETGFLSFAPFDPMGM------KSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGP 582
K TG + G+ FDP+G K +E++ KE+KNGRLAMLA +G QA G GP
Sbjct: 173 KLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGP 232
Query: 583 IETLQLHLADPGHNNIY 633
I+ L HLADPGH I+
Sbjct: 233 IDNLFAHLADPGHATIF 249
Score = 36.2 bits (82), Expect(3) = 2e-15
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +2
Query: 227 SVSAELTNGRWAM--AARCRHPVHRRRVGL---PKFWTAGAEKYALDNQTLALIEVAVFC 391
+V AEL + RWAM AA P ++G+ P ++TAG ++Y D TL ++E+ +
Sbjct: 88 NVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELILIG 147
Query: 392 RAGGQ 406
A G+
Sbjct: 148 WAEGR 152
Score = 25.0 bits (53), Expect(3) = 2e-15
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 PMWYPGATAPGSPGLAPML-GDYVLRPPPPGAVNKDNLKW 225
P+W+PG+T P P L L GD+ P G+ + ++L+W
Sbjct: 51 PIWFPGSTPP--PWLDGSLPGDFGFDPWGLGS-DPESLRW 87
