Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000186A_C04 KCC000186A_c04
(1465 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD28610.1| 60S ribosomal protein L13 [Polytomella sp. Pring... 102 2e-20
sp|O48513|RL13_CHLSW 60S RIBOSOMAL PROTEIN L13 (BBC1 PROTEIN HOM... 97 1e-18
emb|CAC81268.1| putative cold-induced protein [Oryza sativa (ind... 94 5e-18
dbj|BAA92738.1| ESTs AU077873(S1878),D40121(S1878) correspond to... 91 5e-17
sp|P49627|RL13_TOBAC 60S RIBOSOMAL PROTEIN L13 (CLONE 6.2.1) gi|... 90 1e-16
>emb|CAD28610.1| 60S ribosomal protein L13 [Polytomella sp. Pringsheim 198.80]
Length = 207
Score = 102 bits (254), Expect = 2e-20
Identities = 79/206 (38%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Frame = +1
Query: 100 LKTWFNQPARNGAPPGCSLLRSAEAQ-----FPRPAAGLLRPIVRWRRP*STTPSSCIGK 264
+KTWFNQ AR RSA A+ FPRP AG L+PIV + +G+
Sbjct: 21 VKTWFNQAARK------LRRRSARAEKAKKVFPRPVAGSLKPIVHGQTV-KYNSKLRLGR 73
Query: 265 GFTL*RAEVSAGDPCAHGWPALGIAIDHRRRNKSLESLQAERSASEGLPQQPGRLPAQCQ 444
GFTL AE+ A P +GI++D+RRRNKS+E LQ + + P +
Sbjct: 74 GFTL--AELKEAGIPAKFAPTIGISVDYRRRNKSVEGLQENANRLKAYRSNLVIFPRNVK 131
Query: 445 EAEGFRDPSGRCANCGRPGQGRRGPAPGSRPRRRWRPSMVTSEMKATAGKELAEIKATAY 624
+ + F + A+ + A P R +P++ T+ + A E+ E A Y
Sbjct: 132 KPKAFEASAEEKASAAQF-------AGEILPIARCKPTVETAAITA----EMKEFNA--Y 178
Query: 625 AKLRLERMNVRQVGPRAKKAKEAAKE 702
AKLR+ERMNVRQVGPR KK+KEAAKE
Sbjct: 179 AKLRVERMNVRQVGPRVKKSKEAAKE 204
Score = 59.7 bits (143), Expect = 1e-07
Identities = 55/167 (32%), Positives = 76/167 (44%), Gaps = 5/167 (2%)
Frame = +2
Query: 47 HNNVVPEQPLQEEVAVLC*RLGSTSLLAMERRRAARC*EVPRLSSLARPPACCAPLFAGA 226
HNNVVP +++ + RRR+AR + ++ RP A
Sbjct: 4 HNNVVPNNHFKKKWQFYV-KTWFNQAARKLRRRSARAEKAKKV--FPRPVAGSLKPIVHG 60
Query: 227 DPEVQHQAAALARASPCDELK*VLVIPVRMAGQPWASPSTTAAATSRWR-----ACRQNA 391
+ L R ELK IP + A P+ + R R ++NA
Sbjct: 61 QTVKYNSKLRLGRGFTLAELK-EAGIPAKFA------PTIGISVDYRRRNKSVEGLQENA 113
Query: 392 QRLKAYRSNLVVFPRNVKKPKAFETPLADVRTAVAQVKGAVVLPLGQ 532
RLKAYRSNLV+FPRNVKKPKAFE A+ + + AQ G +LP+ +
Sbjct: 114 NRLKAYRSNLVIFPRNVKKPKAFEAS-AEEKASAAQFAGE-ILPIAR 158
>sp|O48513|RL13_CHLSW 60S RIBOSOMAL PROTEIN L13 (BBC1 PROTEIN HOMOLOG)
gi|2662188|dbj|BAA23724.1| BBC1 protein [Chlamydomonas
sp. W80]
Length = 208
Score = 96.7 bits (239), Expect = 1e-18
Identities = 72/203 (35%), Positives = 104/203 (50%), Gaps = 1/203 (0%)
Frame = +1
Query: 100 LKTWFNQPARNGAPPGCSLLRSAEAQFPRPAAGLLRPIVRWRRP*STTPSSCIGKGFTL* 279
+KTWFNQPAR A+A FPRP AG L+PIVR + T +G+GFTL
Sbjct: 21 VKTWFNQPARKQRRRNARA-EKAKATFPRPVAGSLKPIVRCQTVKYNTKQR-LGRGFTLE 78
Query: 280 RAEVSAGDPCAHGWPALGIAIDHRRRNKSLESLQAERSASEGLPQQPGRLPAQCQEAEGF 459
+ AG P P +GIA+DHRR+N+SLE+LQA + P ++ + F
Sbjct: 79 ELK-EAGIPAKFA-PTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAF 136
Query: 460 RDPSGRCANCGRPGQGRRGPAPGSRPRRRWRPSMVTSEMKATAGKELAEIKATAYAKLRL 639
+ C+ + +G P G++P +T++MK + + Y KLR+
Sbjct: 137 EASAADCSAASQ-AKGELLPLKGTKPALEL--VKITADMK----------EGSQYGKLRI 183
Query: 640 ERMNVRQVGPRAKK-AKEAAKEE 705
ER+N R G R K+ A EAAK++
Sbjct: 184 ERVNARLKGMREKRAADEAAKKD 206
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/137 (35%), Positives = 62/137 (44%), Gaps = 6/137 (4%)
Frame = +2
Query: 134 ERRRAARC*EVPRLSSLARPPACCAPLFAGADPEVQHQAAALARASPCDELK*VLVIPVR 313
+RRR AR + ++ RP A + L R +ELK
Sbjct: 32 QRRRNARAEKAK--ATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELK-------- 81
Query: 314 MAGQPWASPSTTAAATSRWRACRQ------NAQRLKAYRSNLVVFPRNVKKPKAFETPLA 475
AG P T A R R N QRLK YR++LV+FPRN+KKPKAFE A
Sbjct: 82 EAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAA 141
Query: 476 DVRTAVAQVKGAVVLPL 526
D +A +Q KG +LPL
Sbjct: 142 DC-SAASQAKGE-LLPL 156
Score = 38.9 bits (89), Expect = 0.24
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 66 NNHFKKKWQFYVED-LVQPACSQWSAAGLLAAKKCRGSVPSPGRRPAAPHCSLAQTLKYN 242
N HF KKWQF+V+ QPA Q A+K + + P P P QT+KYN
Sbjct: 10 NGHFHKKWQFHVKTWFNQPARKQRRRNA--RAEKAKATFPRPVAGSLKP-IVRCQTVKYN 66
Query: 243 TKQ 251
TKQ
Sbjct: 67 TKQ 69
>emb|CAC81268.1| putative cold-induced protein [Oryza sativa (indica
cultivar-group)] gi|32493112|gb|AAP85547.1| ribosomal
protein large subunit 13 [Oryza sativa (japonica
cultivar-group)]
Length = 208
Score = 94.4 bits (233), Expect = 5e-18
Identities = 76/209 (36%), Positives = 105/209 (49%)
Frame = +1
Query: 79 RRSGSSMLKTWFNQPARNGAPPGCSLLRSAEAQFPRPAAGLLRPIVRWRRP*STTPSSCI 258
++ + +KTWFNQPAR + + A FPRP +G LRPIV+ + S
Sbjct: 14 KKHWQNYVKTWFNQPARKQRRR-IARQKKAVKIFPRPTSGPLRPIVQCQTL-KYNMKSRA 71
Query: 259 GKGFTL*RAEVSAGDPCAHGWPALGIAIDHRRRNKSLESLQAERSASEGLPQQPGRLPAQ 438
G+GFTL + +AG P + P +GI++DHRR+N+SLE LQA + + P +
Sbjct: 72 GRGFTLEELK-AAGIPKKYA-PTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRR 129
Query: 439 CQEAEGFRDPSGRCANCGRPGQGRRGPAPGSRPRRRWRPSMVTSEMKATAGKELAEIKAT 618
++ + + A + QG P +R VT EMKA
Sbjct: 130 ARKVKAGDSTAEELATATQV-QGDYMPIARGE-KRSVEVVKVTDEMKAFK---------- 177
Query: 619 AYAKLRLERMNVRQVGPRAKKAKEAAKEE 705
AYAKLR+ERMN R VG R K+A EA KEE
Sbjct: 178 AYAKLRVERMNQRHVGARQKRAAEAEKEE 206
Score = 35.8 bits (81), Expect = 2.0
Identities = 27/68 (39%), Positives = 30/68 (43%), Gaps = 1/68 (1%)
Frame = +3
Query: 66 NNHFKKKWQFYVED-LVQPACSQWSAAGLLAAKKCRGSVPSPGRRPAAPHCSLAQTLKYN 242
N HFKK WQ YV+ QPA Q + KK P P P P QTLKYN
Sbjct: 10 NGHFKKHWQNYVKTWFNQPARKQ--RRRIARQKKAVKIFPRPTSGPLRPIVQ-CQTLKYN 66
Query: 243 TKQLHWQG 266
K +G
Sbjct: 67 MKSRAGRG 74
>dbj|BAA92738.1| ESTs AU077873(S1878),D40121(S1878) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana 60S
ribosomal protein L13 (P41127) [Oryza sativa (japonica
cultivar-group)] gi|24413953|dbj|BAC22205.1| putative
60S ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 208
Score = 90.9 bits (224), Expect = 5e-17
Identities = 74/209 (35%), Positives = 103/209 (48%)
Frame = +1
Query: 79 RRSGSSMLKTWFNQPARNGAPPGCSLLRSAEAQFPRPAAGLLRPIVRWRRP*STTPSSCI 258
++ + +KTWFNQPAR + + A FPRP +G LRPIV+ + S
Sbjct: 14 KKHWQNYVKTWFNQPARKQRRR-IARQKKAVKIFPRPTSGPLRPIVQCQTL-KYNMKSRA 71
Query: 259 GKGFTL*RAEVSAGDPCAHGWPALGIAIDHRRRNKSLESLQAERSASEGLPQQPGRLPAQ 438
G+GFTL + +AG P P +GI++DHRR+N+SLE LQA + + P +
Sbjct: 72 GRGFTLEELK-AAGIPKKFA-PTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRR 129
Query: 439 CQEAEGFRDPSGRCANCGRPGQGRRGPAPGSRPRRRWRPSMVTSEMKATAGKELAEIKAT 618
++ + A + QG P +R VT +MKA
Sbjct: 130 ARKVKAGDSTPEELATATQV-QGDYMPITRGE-KRSVEVVKVTDDMKAFK---------- 177
Query: 619 AYAKLRLERMNVRQVGPRAKKAKEAAKEE 705
AYAKLR+ERMN R +G R K+A EA KEE
Sbjct: 178 AYAKLRVERMNQRHIGARQKRAAEAEKEE 206
Score = 35.8 bits (81), Expect = 2.0
Identities = 27/68 (39%), Positives = 30/68 (43%), Gaps = 1/68 (1%)
Frame = +3
Query: 66 NNHFKKKWQFYVED-LVQPACSQWSAAGLLAAKKCRGSVPSPGRRPAAPHCSLAQTLKYN 242
N HFKK WQ YV+ QPA Q + KK P P P P QTLKYN
Sbjct: 10 NGHFKKHWQNYVKTWFNQPARKQ--RRRIARQKKAVKIFPRPTSGPLRPIVQ-CQTLKYN 66
Query: 243 TKQLHWQG 266
K +G
Sbjct: 67 MKSRAGRG 74
>sp|P49627|RL13_TOBAC 60S RIBOSOMAL PROTEIN L13 (CLONE 6.2.1) gi|1084420|pir||S50116
ribosomal protein L13 - common tobacco
gi|467325|gb|AAA72054.1| [Nicotiana tabacum (clone
6.2.1) mRNA, complete cds.], gene product
Length = 202
Score = 89.7 bits (221), Expect = 1e-16
Identities = 75/209 (35%), Positives = 98/209 (46%)
Frame = +1
Query: 79 RRSGSSMLKTWFNQPARNGAPPGCSLLRSAEAQFPRPAAGLLRPIVRWRRP*STTPSSCI 258
++ + +KTWFNQPAR + + A PRP AG LRPIV +
Sbjct: 9 KKHWQNYVKTWFNQPARK-TRRRIARQKKAVKISPRPTAGTLRPIVHGQTL-KYNMKVRS 66
Query: 259 GKGFTL*RAEVSAGDPCAHGWPALGIAIDHRRRNKSLESLQAERSASEGLPQQPGRLPAQ 438
G+GF+L + +AG P P +GIA+DHRRRN+SLE LQ E L Q P +
Sbjct: 67 GRGFSLEELK-AAGIPKKLA-PTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR 124
Query: 439 CQEAEGFRDPSGRCANCGRPGQGRRGPAPGSRPRRRWRPSMVTSEMKATAGKELAEIKAT 618
+ P NC Q P R + + S V +MK+
Sbjct: 125 ASRSRLVILPP---RNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSF----------N 171
Query: 619 AYAKLRLERMNVRQVGPRAKKAKEAAKEE 705
AYAKLR+ER N R +G R K+A EA KEE
Sbjct: 172 AYAKLRVERTNERHIGARMKRAAEAEKEE 200
