Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000180A_C01 KCC000180A_c01
(529 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_015203.1| Transcription/repair factor TFIIH subunit; Tfb2... 42 0.006
ref|NP_045364.1| immediate-early transactivator protein (cell nu... 38 0.070
gb|AAG34190.1|AC011016_1 L3836.5 [Leishmania major] 37 0.12
emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa (japonica cultiva... 37 0.16
ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF9911... 37 0.16
>ref|NP_015203.1| Transcription/repair factor TFIIH subunit; Tfb2p [Saccharomyces
cerevisiae] gi|2132984|pir||S62000 probable membrane
protein YPL122c - yeast (Saccharomyces cerevisiae)
gi|1163092|gb|AAB68240.1| Lph5p
gi|1778059|gb|AAB40628.1| transcription/repair factor
TFIIH subunit Tfb2 [Saccharomyces cerevisiae]
Length = 513
Score = 41.6 bits (96), Expect = 0.006
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 421 YISGLPGPKRGALYRSPWTCLAVFRNLPPLAQVYVM 528
Y+ +P + LY SP TCLA++R LPPLA+ ++M
Sbjct: 13 YLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIM 48
>ref|NP_045364.1| immediate-early transactivator protein (cell nucleus) [Bovine
herpesvirus 1] gi|9629891|ref|NP_045375.1|
immediate-early transactivator protein (cell nucleus)
[Bovine herpesvirus 1] gi|291536|gb|AAA03610.1| BICP4
gi|2653353|emb|CAA06139.1| immediate-early transactivator
protein (cell nucleus) [Bovine herpesvirus type 1.1]
gi|2653364|emb|CAA06150.1| immediate-early transactivator
protein (cell nucleus) [Bovine herpesvirus type 1.2
(strain K22)]
Length = 1343
Score = 38.1 bits (87), Expect = 0.070
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +2
Query: 173 PLGGGMLSARVRRGSRPISKYLSARGSYS*GGASSAASSPAGATARVCGSRGG 331
P GGG R RRG P + LS+ S S +SSAASSPA + G+ GG
Sbjct: 1287 PAGGGRRPRRPRRGPPPRVEVLSSSSSSS-SSSSSAASSPASSDDDEAGAAGG 1338
>gb|AAG34190.1|AC011016_1 L3836.5 [Leishmania major]
Length = 1010
Score = 37.4 bits (85), Expect = 0.12
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 167 QEPLGGGMLSARVRRGSRPISKYLSAR-GSYS*GGASSAASSPA----GATARVCGSRGG 331
+EPL +A R P S +++A+ G+Y A+S+A +PA GA A + G
Sbjct: 618 EEPLSEAFATAVRRYNEDPPSPFMAAKSGTYL---ATSSAGAPAEEKDGAAAAMTAGNGE 674
Query: 332 LRCSIRITPLLDPSLLLAHYQIQHEWTSLP 421
TP DP + L Y +Q +LP
Sbjct: 675 DLAGASNTPTRDPMVTLVKYNVQRAMKTLP 704
>emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa (japonica cultivar-group)]
Length = 451
Score = 37.0 bits (84), Expect = 0.16
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = +1
Query: 409 DFAAYISGLPGPKRGALYRSPWTCLAVFRNLPPLAQVYVM 528
+F ++ LP K LY S + C AV R+LPPLA+ Y +
Sbjct: 10 NFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYAL 49
>ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF99116.1|AF232689_7 pr5
[rat cytomegalovirus Maastricht]
Length = 629
Score = 37.0 bits (84), Expect = 0.16
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Frame = +3
Query: 153 ACSWRRSRSEA-GCCRQESGEGHALLANISLPADRIPRAGRRAPRQAPRVPRHGSAVHAG 329
+C+ RRS S G R G P R P +P PR GSA +
Sbjct: 512 SCTTRRSSSTCRGAARPRDGSSPT------------PARSGRCP-WSPPWPRPGSAAAST 558
Query: 330 GSGVRSASPHS*ILAFSSPTIKYNTNGLRCLHQWPARP--QARRSIPLPLDLPSRFQESA 503
G G+R +SP S + SS T +++G W RP A RS P S + SA
Sbjct: 559 GRGIRGSSPSS--SSRSSATGTDSSSG-----TWTGRPTGTASRSASRPARCTSTPRASA 611
Query: 504 ASGAG 518
+SG G
Sbjct: 612 SSGGG 616
