KCC000100A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000100A_C01 KCC000100A_c01
CAAACGCCCATTTCAGAGTGTCGCCTACGATTTTTTTAAGTAACATAGAGCCTGTGCAGA
AGAACCCGGCTCGCCATGCGCGACGAGGCTGCGGCCCCCGCTAGTGCGGCTGCCCCGGCT
CCGTTTCTGACGGAAGAGCAGCGGGTGGCACTGGATCAGGCCCTCCGCGACAAGGCGCAA
GAGCAAGCCAAGGCGCGTGCGGCAGCCAACCATAAAGCGGCGGCTGCGTCCGGCGAGCGC
AAGAGTCGCTCTGCTAAGGGCCCGGGCGGTGCCAAGAAGGGTGGCGGCGGCGGCAAGTAC
ACGTGGGGCTCCCTGCTGACCGTCGGAGCTGAGGAGGAGCTTGATCGCAACGACCCCAAC
TATGACTCGGAGGAGGATGAGAAGCACGTGGTGCTCATGCGCAACCACCAGGCGGCGCTG
AAGCAGGAGGTGGCGGCGTATAAGGAGGCGGTGCGGGCGCTGGTGGAGGAGTACTTCAGC
AGCGGCTCCGTGCCGGACGTGGTGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000100A_C01 KCC000100A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH56125.1| Unknown (protein for MGC:69154) [Xenopus laevis]        67  1e-10
ref|NP_567708.1| MA3 domain-containing protein [Arabidopsis thal...    67  2e-10
pir||T06664 hypothetical protein F6I7.10 - Arabidopsis thaliana ...    67  2e-10
gb|AAH45513.1| Similar to programmed cell death 4 [Danio rerio]        65  6e-10
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    64  1e-09

>gb|AAH56125.1| Unknown (protein for MGC:69154) [Xenopus laevis]
          Length = 434

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 45/146 (30%), Positives = 66/146 (44%), Gaps = 24/146 (16%)
 Frame = +1

Query: 139 QRVALDQALRDKAQEQAKARAAANHKAAAASG------------------------ERKS 246
           + V  D   ++KA  +AK +A A H+    S                         ++KS
Sbjct: 12  EEVPRDWTPQEKALHEAKVKAKAKHRIRRTSSRDSAREPDISECPMEPLSPRGKVNDKKS 71

Query: 247 RSAKGPGGAKKGGGGGKYTWGSLLTVGAEEELDRNDPNYDSEEDEKHVVLMRNHQAALKQ 426
           R  KG G  KKGG GGK  WG+   V  ++ELD  DPNYD E D+   V  +      + 
Sbjct: 72  RMGKGRGLPKKGGAGGKGVWGAPGQVYGDQELDARDPNYD-ESDQGDTVYQK---VVPEL 127

Query: 427 EVAAYKEAVRALVEEYFSSGSVPDVV 504
           +    ++ V+ +V+EYF  G   +VV
Sbjct: 128 DEVGLQKNVKPMVQEYFEHGDTGEVV 153

>ref|NP_567708.1| MA3 domain-containing protein [Arabidopsis thaliana]
           gi|17063163|gb|AAL32978.1| AT4g24800/F6I7_10
           [Arabidopsis thaliana] gi|21700927|gb|AAM70587.1|
           AT4g24800/F6I7_10 [Arabidopsis thaliana]
          Length = 702

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 46/136 (33%), Positives = 64/136 (46%), Gaps = 13/136 (9%)
 Frame = +1

Query: 124 FLTEEQRVALDQALR---DKAQEQAKARAAANH--------KAAAASGERKSRSAKGPGG 270
           FLT++QR  +  A +   D    Q        H        KA+ AS   K R +     
Sbjct: 4   FLTDQQREMMKVATQTADDLPPSQKPHSVLLEHLPKPSGGGKASGASNAVKHRRSHAGRS 63

Query: 271 --AKKGGGGGKYTWGSLLTVGAEEELDRNDPNYDSEEDEKHVVLMRNHQAALKQEVAAYK 444
             +KK GGGGK  WG L+    +  +D NDPNYDS E+   +V      A L   +  YK
Sbjct: 64  IRSKKDGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGEEPFELV-----GATLSDPLDDYK 118

Query: 445 EAVRALVEEYFSSGSV 492
           +A  +++ EYFS+G V
Sbjct: 119 KAAASIINEYFSTGDV 134

>pir||T06664 hypothetical protein F6I7.10 - Arabidopsis thaliana
           gi|4678259|emb|CAB41120.1| putative protein [Arabidopsis
           thaliana] gi|7269331|emb|CAB79390.1| putative protein
           [Arabidopsis thaliana]
          Length = 942

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 46/136 (33%), Positives = 64/136 (46%), Gaps = 13/136 (9%)
 Frame = +1

Query: 124 FLTEEQRVALDQALR---DKAQEQAKARAAANH--------KAAAASGERKSRSAKGPGG 270
           FLT++QR  +  A +   D    Q        H        KA+ AS   K R +     
Sbjct: 4   FLTDQQREMMKVATQTADDLPPSQKPHSVLLEHLPKPSGGGKASGASNAVKHRRSHAGRS 63

Query: 271 --AKKGGGGGKYTWGSLLTVGAEEELDRNDPNYDSEEDEKHVVLMRNHQAALKQEVAAYK 444
             +KK GGGGK  WG L+    +  +D NDPNYDS E+   +V      A L   +  YK
Sbjct: 64  IRSKKDGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGEEPFELV-----GATLSDPLDDYK 118

Query: 445 EAVRALVEEYFSSGSV 492
           +A  +++ EYFS+G V
Sbjct: 119 KAAASIINEYFSTGDV 134

>gb|AAH45513.1| Similar to programmed cell death 4 [Danio rerio]
          Length = 470

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 34/88 (38%), Positives = 49/88 (55%)
 Frame = +1

Query: 238 RKSRSAKGPGGAKKGGGGGKYTWGSLLTVGAEEELDRNDPNYDSEEDEKHVVLMRNHQAA 417
           R+SR+ KG G  KKGG GGK  WG+   V  E+E+D  DPNYD+E++             
Sbjct: 102 RRSRTGKGRGLPKKGGAGGKGVWGTPGEVYGEDEVDYKDPNYDAEQEN-----CVYETVV 156

Query: 418 LKQEVAAYKEAVRALVEEYFSSGSVPDV 501
           L  +  A+++ V  +V+EYF  G   +V
Sbjct: 157 LPLDEEAFEKTVTPIVQEYFEHGDANEV 184

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 50/147 (34%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
 Frame = -2

Query: 505 PPRPARSRC*STPPPAPAPPPYTPP------PPASAPPGGCA*APRASHPPPSHSWGRCD 344
           P +P +    + PP APA P   PP      PPA+ PP      P A  PPP     R  
Sbjct: 48  PKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPA 107

Query: 343 QAPPQLRRSAGSPTCTCRRRHPSWHRPGP*QSDSCARRTQPPLYGWLPHAPWLALAPCRG 164
             PP    +A           P  H P P      A R  P      P AP  A AP   
Sbjct: 108 PPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAP-----TPPAPPPAAAPQHA 162

Query: 163 GPDPVPPAALPSETEPGQPH*RGPQPR 83
            P P PPAA P+ T P  P   GP  R
Sbjct: 163 PPPPPPPAARPTPTPPPPPP-AGPAAR 188

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 51/157 (32%), Positives = 55/157 (34%), Gaps = 17/157 (10%)
 Frame = -2

Query: 505 PPRPARSRC*STPPPAPAPP-PYTPPPPASAPPGGCA*APRASHPPPSHSWGRCDQAPPQ 329
           P  PAR    + PPPA APP P   PPPA+APP      P A  PPP     R    PP 
Sbjct: 61  PAAPARP---AAPPPAAAPPHPPAAPPPAAAPP-----RPAAPPPPPPPPAARPAPPPPP 112

Query: 328 LRRSAGSPTCTCRRRHPSWHRPGP*QSDSCARRTQPPLYGWLPHAPWLALAPCRGGPDPV 149
              +A           P  H P P      A R  P      P AP  A AP    P P 
Sbjct: 113 PPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPT-----PPAPPPAAAPQHAPPPPP 167

Query: 148 PP----------------AALPSETEPGQPH*RGPQP 86
           PP                AA P+      P    P P
Sbjct: 168 PPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPP 204

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 40/133 (30%), Positives = 46/133 (34%)
 Frame = -2

Query: 505 PPRPARSRC*STPPPAPAPPPYTPPPPASAPPGGCA*APRASHPPPSHSWGRCDQAPPQL 326
           PP P  +R    PPP P   P  P PP +A P   A  P    PP +         PP  
Sbjct: 98  PPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAA 157

Query: 325 RRSAGSPTCTCRRRHPSWHRPGP*QSDSCARRTQPPLYGWLPHAPWLALAPCRGGPDPVP 146
                 P        P+   P P  +   AR T  P     P AP  A    R  P    
Sbjct: 158 APQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTAR--PGSPA 215

Query: 145 PAALPSETEPGQP 107
           PAA P+ T    P
Sbjct: 216 PAATPAPTPTPAP 228

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 5/138 (3%)
 Frame = -2

Query: 505 PPRPARSRC*STPPPAPAPPPYTPPPPASAPPGGCA*APRASHPPPSHSWGR-CDQAPPQ 329
           PP PA     + PPP PA P   P P  +A P   A       PPP+    R    AP  
Sbjct: 166 PPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVA-------PPPAAPTARPGSPAPAA 218

Query: 328 LRRSAGSPTCTCRRRHPSWHRPGP*QSDSCARRTQPPLYGWLPHAPWLALAPCRGGPDPV 149
                 +P  T      +   PG       A R   P  G  P +P  A +P   G  P 
Sbjct: 219 TPAPTPTPAPTATPAPTATPAPGSTPGAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPA 278

Query: 148 P---PAALPSETEP-GQP 107
           P   PA   + T P G+P
Sbjct: 279 PTTTPAPGGTATPPSGRP 296

 Score = 32.0 bits (71), Expect = 4.5
 Identities = 37/145 (25%), Positives = 45/145 (30%), Gaps = 3/145 (2%)
 Frame = -2

Query: 505 PPRPARSRC*STPP---PAPAPPPYTPPPPASAPPGGCA*APRASHPPPSHSWGRCDQAP 335
           P  P   R  + PP   P   P   +PP P + P      AP  +  PPS   G      
Sbjct: 244 PGAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPA 303

Query: 334 PQLRRSAGSPTCTCRRRHPSWHRPGP*QSDSCARRTQPPLYGWLPHAPWLALAPCRGGPD 155
           P      G+ T            P P  + +      PP     P  P     P  G   
Sbjct: 304 P------GAAT------------PAPTATPAPGGALTPP-----PGRP--GAGPTPGPQG 338

Query: 154 PVPPAALPSETEPGQPH*RGPQPRR 80
             PPA  P+   P  P   G  P R
Sbjct: 339 GTPPAGAPAAGTPAAPPQAGGLPAR 363



EST assemble image


clone accession position
1 HCL077b05_r AV643849 1 588
2 LCL024c06_r AV627278 80 384
3 CL04h03_r AV393365 82 511
4 MXL047a03_r BP095759 90 495
5 CL13f02_r AV393908 91 598
6 HCL097b02_r AV645021 91 504
7 HCL009b05_r AV640032 91 302
8 MXL066f12_r BP096897 91 458
9 LCL083c12_r AV630725 92 576
10 CL14c03_r AV393863 93 553
11 HCL012c11_r AV640216 208 569




Chlamydomonas reinhardtii
Kazusa DNA Research Institute