KCC000097A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000097A_C01 KCC000097A_c01
CTCGTATCACTTTAAAAATGAAGGCTACTCTGCGTGCCCCCGCTTCCCGCGCCAGCGCTG
TGCGCCCCGTCGCCAGCCTGAAGGCCGCTGCTCAGCGCGTGGCCTCGGTCGCCGGTGTGT
CGGTTGCCTCTCTGGCCCTGACCCTGGCTGCCCACGCCGACGCCACCGTCAAGCTGGGCG
CTGACTCTGGTGCTCTGGAGTTCGTCCCCAAGACCCTGACCATCAAGTCCGGCGAGACCG
TGAACTTCGTGAACAACGCTGGCTTCCCCCACAACATCGTCTTCGACGAGGATGCCATCC
CCTCCGGCGTGAACGCTGATGCCATCTCCCGCGATGACTACCTGAACGCCCCCGGCGAGA
CCTACTCGGTGAAGCTGACCGCTGCCGGCGAGTACGGCTACTACTGCGAGCCCCACCAGG
GCGCTGGCATGGTCGGCAAGATCATTGTCCAGTAAATTGCTGGCGGCTGCCTTCATTTTG
TGACCGTGTGTGTTTCGGGGTGTGGGGTCGGGGGTTTTTGCGGCGTCCGGATGGACGCAG
AGAGCGTGTAGCTCTGTAACTTTTTCCTCGGACAAAAAAAAAAAAAAAAACTCCTGGGGG
GCCGGTCCCATTCCCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000097A_C01 KCC000097A_c01
         (618 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P18068|PLAS_CHLRE Plastocyanin, chloroplast precursor (PC6-2)...   282  2e-75
pdb|2PLT|   Plastocyanin                                              201  5e-51
sp|P26956|PLAS_SCEOB Plastocyanin, chloroplast precursor gi|4138...   189  3e-47
pir||T44426 plastocyanin precursor [similarity] - Pediastrum bor...   186  3e-46
pir||JW0013 plastocyanin - green alga (Scenedesmus obliquus)          163  2e-39

>sp|P18068|PLAS_CHLRE Plastocyanin, chloroplast precursor (PC6-2) gi|99419|pir||A36569
           plastocyanin precursor [validated] - Chlamydomonas
           reinhardtii gi|167401|gb|AAA33078.1| apoplastocyanin
           (PC6-2) precursor gi|167430|gb|AAA33089.1| plastocyanin
          Length = 145

 Score =  282 bits (722), Expect = 2e-75
 Identities = 145/145 (100%), Positives = 145/145 (100%)
 Frame = +3

Query: 18  MKATLRAPASRASAVRPVASLKAAAQRVASVAGVSVASLALTLAAHADATVKLGADSGAL 197
           MKATLRAPASRASAVRPVASLKAAAQRVASVAGVSVASLALTLAAHADATVKLGADSGAL
Sbjct: 1   MKATLRAPASRASAVRPVASLKAAAQRVASVAGVSVASLALTLAAHADATVKLGADSGAL 60

Query: 198 EFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKL 377
           EFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKL
Sbjct: 61  EFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKL 120

Query: 378 TAAGEYGYYCEPHQGAGMVGKIIVQ 452
           TAAGEYGYYCEPHQGAGMVGKIIVQ
Sbjct: 121 TAAGEYGYYCEPHQGAGMVGKIIVQ 145

>pdb|2PLT|   Plastocyanin
          Length = 98

 Score =  201 bits (512), Expect = 5e-51
 Identities = 98/98 (100%), Positives = 98/98 (100%)
 Frame = +3

Query: 159 DATVKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDD 338
           DATVKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDD
Sbjct: 1   DATVKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDD 60

Query: 339 YLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIVQ 452
           YLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIVQ
Sbjct: 61  YLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIVQ 98

>sp|P26956|PLAS_SCEOB Plastocyanin, chloroplast precursor gi|4138881|gb|AAD03610.1|
           plastocyanin [Scenedesmus obliquus]
          Length = 145

 Score =  189 bits (480), Expect = 3e-47
 Identities = 92/140 (65%), Positives = 111/140 (78%)
 Frame = +3

Query: 33  RAPASRASAVRPVASLKAAAQRVASVAGVSVASLALTLAAHADATVKLGADSGALEFVPK 212
           +A  + A A R      A+ QRVA  AGV+VA  +L L+A+A A VKLGADSGAL F P 
Sbjct: 7   KAAVAPAKATRTTVKASASLQRVAQAAGVAVAGFSLALSANA-ANVKLGADSGALVFEPA 65

Query: 213 TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAGE 392
           T+TIK+G++V + NNAGFPHNIVFDEDA+P+GVNADA+S DDYLNAPGE+Y+ K   AGE
Sbjct: 66  TVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNADALSHDDYLNAPGESYTAKFDTAGE 125

Query: 393 YGYYCEPHQGAGMVGKIIVQ 452
           YGY+CEPHQGAGMVGK+IVQ
Sbjct: 126 YGYFCEPHQGAGMVGKVIVQ 145

>pir||T44426 plastocyanin precursor [similarity] - Pediastrum boryanum
           gi|6006308|dbj|BAA84778.1| pre-apoplastocyanin
           [Pediastrum boryanum]
          Length = 151

 Score =  186 bits (471), Expect = 3e-46
 Identities = 98/150 (65%), Positives = 117/150 (77%), Gaps = 6/150 (4%)
 Frame = +3

Query: 18  MKATLRAPASRASA---VRPVA-SLKAAA--QRVASVAGVSVASLALTLAAHADATVKLG 179
           M  ++R+   RAS     RP A ++KA A  Q+VA VAGV+V+SLAL  AA ADATVKLG
Sbjct: 1   MAVSMRSATVRASGRVQARPAARTVKATASLQKVAQVAGVAVSSLALAFAAGADATVKLG 60

Query: 180 ADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGE 359
           ADSGAL F P T+TIK+GE+V++VNNAG+PHNIVFDED+IP G NADA+S +DYLNAPGE
Sbjct: 61  ADSGALVFDPATVTIKAGESVSWVNNAGYPHNIVFDEDSIPGGENADALSHEDYLNAPGE 120

Query: 360 TYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 449
           T S K   AG Y YYCEPHQGAGM GK++V
Sbjct: 121 TVSSKFATAGTYEYYCEPHQGAGMKGKVVV 150

>pir||JW0013 plastocyanin - green alga (Scenedesmus obliquus)
          Length = 97

 Score =  163 bits (413), Expect = 2e-39
 Identities = 74/97 (76%), Positives = 86/97 (88%)
 Frame = +3

Query: 162 ATVKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDY 341
           A VKLGADSGAL F P T+TIK+G++V + NNAGFPHNIVFDEDA+P+GVNADA+S DDY
Sbjct: 1   ANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNADALSHDDY 60

Query: 342 LNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIVQ 452
           LNAPGE+Y+ K   AGEYGY+CEPHQGAGMVGK+IVQ
Sbjct: 61  LNAPGESYTAKFDTAGEYGYFCEPHQGAGMVGKVIVQ 97



EST assemble image


clone accession position
1 MX223d07_r BP090398 1 438
2 CL27f03_r AV394727 3 529
3 CL69d02_r AV396819 9 643
4 LC065b07_r AV623525 11 553
5 CL19f04_r AV394179 11 590
6 CL38a01_r AV395282 16 626
7 CL41c07_r AV395427 17 542
8 CL78h08_r AV397199 21 640
9 CL50d10_r AV395763 21 682
10 CL72f11_r AV397041 21 644
11 LC050b06_r AV622468 23 687
12 CL37b04_r AV395251 23 644
13 CL75g09_r AV397049 23 617
14 CL53g11_r AV395995 23 477
15 MX104h05_r BP089108 24 616
16 CL61h11_r AV396331 24 526
17 CL34d04_r AV394920 25 645
18 CL54a02_r AV396157 27 684
19 CL09a02_r AV393744 31 646
20 CL55c04_r AV396021 37 588
21 MX220h06_r BP090238 41 627
22 MX104f01_r BP089082 41 552
23 CL23g11_r AV394494 58 632
24 HC093a02_r AV638947 59 700
25 CM074d05_r AV391572 101 752
26 CM035c08_r AV388746 101 624
27 CS001c10_r AV398023 101 686
28 CM088b05_r AV393033 101 660
29 CM049g11_r AV389636 101 514
30 CM097g11_r AV393236 101 617
31 CL26c05_r AV394604 101 596
32 CM018b04_r AV387235 101 603
33 CM097d08_r AV393213 101 644
34 CM094b07_r AV393267 101 643
35 MX007a06_r BP086344 102 602
36 CM056b04_r AV390296 103 739
37 CL49g09_r AV397727 103 648
38 CL42c04_r AV395469 103 646
39 LC019a12_r AV620211 103 655
40 CL63h04_r AV396514 103 660
41 CL52c10_r AV395874 103 643
42 CL64a05_r AV396611 103 708
43 CL70h04_r AV396826 103 616
44 CM094a04_r AV393283 103 295
45 HCL037g05_r AV641628 103 537
46 CL13d01_r AV393917 103 626
47 CL62d08_r AV396408 103 607
48 CL78f08_r AV397198 103 603
49 LC078g09_r AV624516 103 553
50 MXL057f08_r BP096371 103 557
51 CL46c09_r AV395656 103 633
52 CL47g04_r AV395678 103 599
53 MXL047d03_r BP095784 103 515
54 CL70a01_r AV396856 103 667
55 CL70a12_r AV396839 103 708
56 LC080a06_r AV624601 103 626
57 HCL014g05_r AV640353 103 596
58 CL64b03_r AV396635 103 689
59 HC026b07_r AV633856 103 642
60 CL06b04_r AV393598 103 588
61 CL07c10_r AV393443 103 648
62 CL39e02_r AV395181 104 644
63 MX247g03_r BP091976 104 586
64 HCL017f10_r AV640516 104 497
65 CM040f09_r AV389195 104 683
66 CL66a03_r AV396758 105 635
67 CL48g06_r AV395831 105 644
68 CL74g12_r AV396502 105 690
69 CL45b07_r AV397770 105 706
70 CL60h03_r AV396351 105 690
71 MXL062b11_r BP096638 105 513
72 MXL097d11_r BP098690 105 552
73 CL36a11_r AV395158 107 646
74 CL48b07_r AV395810 107 674
75 CL32a08_r AV394853 107 666
76 CL32d08_r AV394857 107 667
77 CL77f03_r AV397253 107 635
78 CL25g01_r AV394517 109 632
79 HCL001c01_r AV639575 110 417
80 MX241a08_r BP091561 110 641
81 MX250f08_r BP092172 110 549
82 MX237h05_r BP091381 112 528
83 MX213a11_r BP089733 112 436
84 MX243h09_r BP091761 112 613
85 CL38d04_r AV395298 114 659
86 CL32e05_r AV394834 114 627
87 CL45g12_r AV397809 114 598
88 CM099a02_r AV393162 114 643
89 CL47c10_r AV395696 114 644
90 CL38b08_r AV395309 114 646
91 CL27b07_r AV394728 114 648
92 CL75a04_r AV397065 114 683
93 CL53g06_r AV395964 115 700
94 MXL078a04_r BP097577 115 538
95 CL25f02_r AV394538 115 626
96 MX058a03_r BP088337 115 496
97 CL18g05_r AV394060 115 643
98 MXL051c07_r BP096026 115 600
99 CL51h04_r AV395934 115 590
100 MX057e07_r BP088325 115 504
101 CL48g07_r AV395816 115 660
102 CL20d11_r AV394306 115 699
103 CL06a12_r AV393617 115 642
104 CL15f10_r AV393945 115 672
105 CL16g09_r AV394003 115 619
106 CL10b08_r AV393688 115 542
107 CL04g03_r AV393364 115 661
108 CL49a07_r AV397745 115 660
109 MX101h06_r BP088856 116 535
110 CL33g09_r AV394950 116 451
111 CM084d08_r AV392620 116 644
112 CL42d04_r AV395470 116 603
113 MX103d04_r BP088977 116 622
114 CL14f08_r AV393862 116 683
115 CL15b12_r AV393964 116 648
116 CL26c02_r AV394569 116 667
117 HC033f08_r AV634460 116 616
118 CL37h10_r AV395242 116 665
119 MX104d05_r BP089064 116 538
120 MX104f02_r BP089083 116 537
121 MX103a05_r BP088947 116 625
122 CL65d09_r AV396565 116 698
123 CM071h01_r AV391359 116 776
124 MX104h09_r BP089112 116 635
125 CL07a11_r AV393479 116 649
126 CL80f07_r AV397331 116 626
127 CL15a08_r AV393946 116 644
128 MX104f09_r BP089090 116 643
129 CL14c04_r AV393857 116 646
130 CL71b12_r AV396887 116 642
131 MXL017d11_r BP094049 116 483
132 MX104b08_r BP089044 116 637
133 CL39d08_r AV395203 116 633
134 HC030f12_r AV634221 116 640
135 CM023e10_r AV387780 116 759
136 CL77c11_r AV397272 116 647
137 CM003d11_r AV386614 116 695
138 MX202b01_r BP089172 116 501
139 CL05c10_r AV393591 116 503
140 MX029e03_r BP087263 116 484
141 CL64c03_r AV396636 116 674
142 MXL049a11_r BP095905 116 590
143 CL69b05_r AV396814 116 699
144 MX103d10_r BP088983 116 522
145 CM011c09_r AV386906 116 685
146 CL74f01_r AV396466 116 578
147 CL47g01_r AV395686 116 682
148 MXL027g03_r BP094702 116 478
149 MXL013c05_r BP093759 116 432
150 MXL049h07_r BP095948 116 554
151 MX104f12_r BP089093 116 686
152 MX103e12_r BP088995 116 548
153 HC071d11_r AV637308 116 547
154 MX103f09_r BP089003 116 546
155 MX102h10_r BP088941 116 545
156 CL59b05_r AV397908 116 682
157 CL62d04_r AV396402 116 667
158 MX104c04_r BP089051 116 530
159 LCL004g05_r AV626229 116 487
160 CL80c06_r AV397342 116 531
161 CL21f12_r AV394353 116 671
162 MX101e07_r BP088826 116 540
163 CM086e07_r AV392567 118 662
164 CL43h07_r AV395571 118 642
165 CM044e09_r AV389541 118 702
166 CL67h08_r AV396697 118 650
167 CL10g11_r AV393668 118 649
168 CL61g03_r AV396307 118 649
169 CL20d07_r AV394286 118 665
170 CL11e02_r AV393756 118 648
171 CL64c05_r AV396614 118 600
172 CL55a11_r AV396059 118 643
173 CM030a05_r AV397383 119 743
174 CL76d10_r AV397138 119 626
175 CL37g08_r AV395226 119 613
176 CL42d02_r AV395447 120 616
177 HC053g05_r AV635991 120 592
178 CL44d06_r AV395590 121 543
179 CL53g05_r AV395973 121 709
180 CL28e05_r AV394806 125 667
181 HC025e05_r AV633806 125 604
182 CL65d02_r AV396594 125 621
183 CL17b03_r AV394128 126 672
184 CL27f06_r AV394692 126 662
185 CL40h03_r AV395372 127 668
186 CL08f03_r AV393512 127 670
187 CL65e09_r AV396566 128 811
188 CM053g10_r AV389905 134 490
189 CL41b04_r AV395416 148 645
190 CL62d09_r AV396438 149 690
191 CL61c09_r AV396335 151 708
192 CL21b01_r AV394374 152 649
193 CL76h06_r AV397127 153 706
194 CL21d10_r AV394388 155 702
195 CL57b01_r AV396279 160 706
196 CL71e01_r AV396900 161 671
197 CM097f01_r AV393238 174 716
198 CM008c05_r AV386710 185 749
199 CL31h07_r AV395015 196 708
200 CL50h04_r AV395743 199 755
201 MX058h09_r BP088374 206 697
202 CL09b05_r AV393709 286 705
203 CL44g08_r AV395626 286 706
204 CL26h02_r AV394579 355 705




Chlamydomonas reinhardtii
Kazusa DNA Research Institute