KCC000084A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000084A_C01 KCC000084A_c01
CTGGAAGGGCTTTGAAAAATGGTGCAGCCACTCAAGAAGGTGAAGATCGTGAAGAAGCGC
ACGAAGCACTTCGATCGCCACCAGAGCGACCGCAAGGACTCGATCAAGACCTCATGGCGC
AAGCCCAAGGGTATTGATAACCGCGTCCGCCGCAGGTTCAAGGGCGCCCTGCCGATGCCC
AACATCGGCTACGGCTCGAACGCCAAGACCCGCCACACGCTCCCCAACGGCTTCCTGAAG
TACACTGTGAACAACGTGAAGGACCTGGAGCTGCTCATGATGCACAACCGTCGCTTCTGC
GCCGAGATTGCGCACAACGTGGCCGTGCTCAAGCGCAAGGCCATCGTGGAGCGCGCCGCC
CAGCTGAACATCCGCGTCATCAACGGCGCCGCCCGCCTGCGCAGCCAGGAGGACGAGTAA
ACAGCCGGCCTGCAGTTACGGCGGCGCGGCGGCGCCGCCGTGGCCGTGCGCCGGTGGCGG
CTTGGCTTCACGTAGCTGGGGGGCCTGCTGGCGGCGGTGCGGCGGCGGCAGTGCGTCGCT
TTGCGGGAATGGACCGGGTGGTTTGGGGTGGTTGGGGTGGTATGGCTGGCGCCGCCGGCC
GGACTCGGGGCCGGAGGCGGCGCGTGgccgcgttgcgggcttccgcggtcgcaggagagg
tgttatgtctgtaacctaaaaagtcgcg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000084A_C01 KCC000084A_c01
         (688 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK92167.1|AF400195_1 ribosomal protein L32 [Spodoptera frugi...   189  3e-47
ref|NP_000985.1| ribosomal protein L32; 60S ribosomal protein L3...   184  1e-45
gb|AAO31774.1| ribosomal protein L32 [Branchiostoma belcheri tsi...   183  2e-45
gb|AAK43709.1|AF358665_1 ribosomal protein L32 [Mercurialis annu...   181  7e-45
ref|NP_193544.1| 60S ribosomal protein L32 (RPL32A) [Arabidopsis...   181  1e-44

>gb|AAK92167.1|AF400195_1 ribosomal protein L32 [Spodoptera frugiperda]
          Length = 134

 Score =  189 bits (480), Expect = 3e-47
 Identities = 92/132 (69%), Positives = 108/132 (81%)
 Frame = +1

Query: 22  VQPLKKVKIVKKRTKHFDRHQSDRKDSIKTSWRKPKGIDNRVRRRFKGALPMPNIGYGSN 201
           ++P+ +  IVKKRTK F RHQSDR D +K +WRKP+GIDNRVRRRFKG   MPNIGYGSN
Sbjct: 3   IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 202 AKTRHTLPNGFLKYTVNNVKDLELLMMHNRRFCAEIAHNVAVLKRKAIVERAAQLNIRVI 381
            KTRH LPNGF K  V+NV++LE+LMM NR++CAEIAH V+  KRK IVERA QL+IRV 
Sbjct: 63  KKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVT 122

Query: 382 NGAARLRSQEDE 417
           N AARLRSQE+E
Sbjct: 123 NSAARLRSQENE 134

>ref|NP_000985.1| ribosomal protein L32; 60S ribosomal protein L32 [Homo sapiens]
           gi|6981482|ref|NP_037358.1| ribosomal protein L32
           [Rattus norvegicus] gi|25742730|ref|NP_742083.1|
           ribosomal protein L32 [Mus musculus]
           gi|34867351|ref|XP_346784.1| ribosomal protein L32
           [Rattus norvegicus] gi|132886|sp|P02433|RL32_HUMAN 60S
           ribosomal protein L32 gi|71335|pir||R5HU32 ribosomal
           protein L32 - human gi|71336|pir||R5MS32 ribosomal
           protein L32 - mouse gi|71337|pir||R5RT32 ribosomal
           protein L32, cytosolic [validated] - rat
           gi|36132|emb|CAA27048.1| unnamed protein product [Homo
           sapiens] gi|57117|emb|CAA29777.1| unnamed protein
           product [Rattus norvegicus] gi|200781|gb|AAC28897.1|
           ribosomal protein L32-3A [Mus musculus]
           gi|12832269|dbj|BAB22032.1| unnamed protein product [Mus
           musculus] gi|12846858|dbj|BAB27335.1| unnamed protein
           product [Mus musculus] gi|12849325|dbj|BAB28296.1|
           unnamed protein product [Mus musculus]
           gi|15079342|gb|AAH11514.1| Ribosomal protein L32 [Homo
           sapiens] gi|17932956|dbj|BAB79469.1| ribosomal protein
           L32 [Homo sapiens] gi|24059814|dbj|BAC21646.1| ribosomal
           protein L32 [Macaca fascicularis]
           gi|26389920|dbj|BAC25812.1| unnamed protein product [Mus
           musculus] gi|28374379|gb|AAH46339.1| Rpl32 protein [Mus
           musculus] gi|226004|prf||1405339A ribosomal protein L32
          Length = 135

 Score =  184 bits (467), Expect = 1e-45
 Identities = 92/132 (69%), Positives = 109/132 (81%)
 Frame = +1

Query: 22  VQPLKKVKIVKKRTKHFDRHQSDRKDSIKTSWRKPKGIDNRVRRRFKGALPMPNIGYGSN 201
           ++PL K KIVKKRTK F RHQSDR   IK +WRKP+GIDNRVRRRFKG + MPNIGYGSN
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 202 AKTRHTLPNGFLKYTVNNVKDLELLMMHNRRFCAEIAHNVAVLKRKAIVERAAQLNIRVI 381
            KT+H LP+GF K+ V+NVK+LE+L+M N+ +CAEIAHNV+   RKAIVERAAQL IRV 
Sbjct: 64  KKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVT 123

Query: 382 NGAARLRSQEDE 417
           N  ARLRS+E+E
Sbjct: 124 NPNARLRSEENE 135

>gb|AAO31774.1| ribosomal protein L32 [Branchiostoma belcheri tsingtaunese]
          Length = 134

 Score =  183 bits (464), Expect = 2e-45
 Identities = 92/133 (69%), Positives = 106/133 (79%)
 Frame = +1

Query: 19  MVQPLKKVKIVKKRTKHFDRHQSDRKDSIKTSWRKPKGIDNRVRRRFKGALPMPNIGYGS 198
           +V+PL+K KIVKKR K F RHQSDR D +K +WRKPKGIDNRVRRRFKG   MPNIGYGS
Sbjct: 2   VVRPLRKPKIVKKRVKKFIRHQSDRYDKLKQNWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 199 NAKTRHTLPNGFLKYTVNNVKDLELLMMHNRRFCAEIAHNVAVLKRKAIVERAAQLNIRV 378
             KT+H LP+GF K+ V+NV DLE+L+M NR FCAEIAHNV+  KRK IVERA QL I+V
Sbjct: 62  AKKTKHLLPSGFKKFLVHNVTDLEVLLMQNRTFCAEIAHNVSSRKRKLIVERAQQLAIKV 121

Query: 379 INGAARLRSQEDE 417
            N  ARLRS+E E
Sbjct: 122 TNPNARLRSEEYE 134

>gb|AAK43709.1|AF358665_1 ribosomal protein L32 [Mercurialis annua]
           gi|13899053|gb|AAK48948.1|AF370436_1 ribosomal protein
           L32 [Mercurialis annua]
           gi|13899055|gb|AAK48949.1|AF370437_1 ribosomal protein
           L32 [Mercurialis annua]
           gi|13899057|gb|AAK48950.1|AF370438_1 ribosomal protein
           L32 [Mercurialis annua]
          Length = 133

 Score =  181 bits (460), Expect = 7e-45
 Identities = 91/133 (68%), Positives = 106/133 (79%)
 Frame = +1

Query: 19  MVQPLKKVKIVKKRTKHFDRHQSDRKDSIKTSWRKPKGIDNRVRRRFKGALPMPNIGYGS 198
           M  PL   KIVKKR K F R Q DRK S+K +WR+PKGID+RVRR+FKG   MPNIGYGS
Sbjct: 1   MAVPLLTKKIVKKRVKKFKRPQWDRKISVKENWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 199 NAKTRHTLPNGFLKYTVNNVKDLELLMMHNRRFCAEIAHNVAVLKRKAIVERAAQLNIRV 378
           + KTRH LPNGF K+ V+NV++LELLMMHNR +CAEIAH+V+  KRK IVERAAQL++ V
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKDIVERAAQLDVVV 120

Query: 379 INGAARLRSQEDE 417
            N  ARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

>ref|NP_193544.1| 60S ribosomal protein L32 (RPL32A) [Arabidopsis thaliana]
           gi|27735239|sp|P49211|R32A_ARATH 60S ribosomal protein
           L32A gi|7441093|pir||T14810 ribosomal protein L32,
           cytosolic - Arabidopsis thaliana
           gi|5816996|emb|CAB53651.1| ribosomal protein L32-like
           protein [Arabidopsis thaliana]
           gi|7268562|emb|CAB78812.1| ribosomal protein L32-like
           protein [Arabidopsis thaliana]
           gi|15982917|gb|AAL09805.1| AT4g18100/F15J5_70
           [Arabidopsis thaliana] gi|18252929|gb|AAL62391.1|
           ribosomal protein L32 -like protein [Arabidopsis
           thaliana] gi|23198054|gb|AAN15554.1| ribosomal protein
           L32 -like protein [Arabidopsis thaliana]
          Length = 133

 Score =  181 bits (458), Expect = 1e-44
 Identities = 88/133 (66%), Positives = 106/133 (79%)
 Frame = +1

Query: 19  MVQPLKKVKIVKKRTKHFDRHQSDRKDSIKTSWRKPKGIDNRVRRRFKGALPMPNIGYGS 198
           M  PL   K+VKKR+  F R QSDR+ ++K SWR+PKGID+RVRR+FKG   MPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 199 NAKTRHTLPNGFLKYTVNNVKDLELLMMHNRRFCAEIAHNVAVLKRKAIVERAAQLNIRV 378
           + KTRH LPNGF K+ V+N  +LELLMMHNR +CAEIAHNV+  KRKAIVERA+QL++ V
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 379 INGAARLRSQEDE 417
            N  ARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133



EST assemble image


clone accession position
1 MX029f11_r BP087271 1 483
2 MXL059g03_r BP096499 5 469
3 LCL090f11_r AV631238 99 441
4 CL13f04_r AV393934 101 538
5 HC033a08_r AV634411 103 554
6 CM032e06_r AV388487 111 535
7 MXL029b10_r BP094769 116 402
8 CS001c02_r AV397977 116 648
9 HCL013a01_r AV640245 116 260
10 CM070c09_r AV391295 116 753
11 CM031a06_r AV388318 116 293
12 MXL037d03_r BP095184 116 553
13 MXL007b03_r BP093341 116 370
14 LC055g02_r AV622864 116 536
15 MXL061h09_r BP096620 116 504
16 MXL039e02_r BP095293 116 502
17 CL04a01_r AV393379 116 595
18 LC044h01_r AV622130 116 533
19 MXL057a02_r BP096333 116 578
20 HC010b03_r AV632592 126 592
21 CS001g06_r AV397989 129 554
22 MXL005f04_r BP093248 129 540
23 HC081d11_r AV638066 129 596
24 CM049b01_r AV389639 148 427
25 MXL032f11_r BP094929 156 552
26 HCL030c06_r AV641237 180 684
27 HCL005h12_r AV639839 266 669
28 CL31g06_r AV395029 272 742
29 HCL024d05_r AV640902 398 694
30 MXL100g09_r BP098883 402 804
31 CM001e09_r AV386532 589 810
32 HCL045h02_r AV642115 653 802




Chlamydomonas reinhardtii
Kazusa DNA Research Institute