KCC000073A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000073A_C01 KCC000073A_c01
ACTTCCGCATCTGCGTGTTCTGTAACTTCGAACACCAACTCCAACCGCGCGCGAGTCAAT
TTCCACCCAAAATGCCTGTCATCGAAATTATTGTGAACAAGCCTCTTGATGACAAGAAGG
CCCTGTCAAAGAGCATTACGGACCTGTTCGCGCATGAAGTGCGGGTCCCTCCCGGCCATG
TCCACACGTTGATCCTGGACAACCAGTACTTTGCCTTTGGCAATGACGTGGACAAGACCG
CCGTGTATGTCAAGGTGCGCAGCAGCGCCCAGCAGATTACGGCTGAGGCCCGGCGCACCC
TGGTGGCGGAGCTCATCCCTCTGCTCATCACCGCCTTCCCAGACCTGGACGCCTACCGCG
TCAACACCATGTTTGAGGAGCTGCCCGTTGAGAATATCGCCGTCGGAGCGCACATCGCCG
TGTTCGGCGCGCCGCCCTCCACCAGCTCCGCACGCAACAGCCTGGGCGGCTTGTAAGGGG
GCTCGGGCTCGCGTGTAGGGAGAAGCGTGTGCGTGTGCGGGCGCGGGCGCGGGTATGTGT
GTGTCGGGCTTTGTTCGCTAGGCTGGCTGGCTGGCTGGGCTGACGCATGAGCTTGCTTGC
GTTGCTGACTTTGCGGGTCGGTTGGCGGAGCTGTGGGTTGGAGACGGAGGAGATGGGTGT
GGTTGCGGGCGGCGGCGGTGGCGTGGGGGTGTTGGCGGCTTGGTTTCGCTGTTCGGGCGT
TCGGGACGTAATTGTGAGGGGCTGTGGGGCATACATCTAGGGGGTAGGGACGCGTATGTT
TGTTTCCCTCCCAACAGTTCTTTTGTCTAGCTTGCATGAGCGAGGTAGACCCAGTCAGTA
GCGTGCACACAGGGCTGTGGGCGTAGGGTGGTCATGCGTCAGCATCGCGTTGGGTGTGCC
AGAAGTCGGATCCACCGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000073A_C01 KCC000073A_c01
         (920 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    58  3e-07
gb|AAC72983.1| Wolf-Hirschhorn syndrome candidate 2 protein homo...    57  3e-07
pir||PQ0479 pistil extensin-like protein (clone pMG14) - common ...    54  4e-06
ref|NP_253724.1| hypothetical protein [Pseudomonas aeruginosa PA...    53  6e-06
ref|XP_352404.1| similar to contains similarity to cell wall-pla...    50  8e-06

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 32/92 (34%), Positives = 39/92 (41%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQA 594
           A+ PP      P    P RP +   PP PP  R  P P P PP+     +  PA +  Q 
Sbjct: 73  AAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQH 132

Query: 593 SSCVSPASQPA*RTKPDTHIPAPAPAHAHASP 498
           +    P + PA R  P    P PA A  HA P
Sbjct: 133 APTPPPPAPPAARPAPTPPAPPPAAAPQHAPP 164

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
 Frame = -1

Query: 764 PPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSAN-RPAKSATQ--- 597
           PP   P       P     +  PP PP    RP P P PP P   +A   PA +AT    
Sbjct: 141 PPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPV 200

Query: 596 ASSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAPLQAAQAVACGAGG 438
           A    +P ++P       T  P P PA       T   AP     A   G  G
Sbjct: 201 APPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGAPPAGRPG 253

 Score = 40.0 bits (92), Expect = 0.055
 Identities = 32/98 (32%), Positives = 40/98 (40%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQA 594
           A+  P   P +P   RP  P    +P +PP     P P  + P+PT + A  P  +AT  
Sbjct: 236 ATPAPGSTPGAPPAGRPGAPPPGVRPGSPPAAGSPPAP-GATPAPTTTPA--PGGTATPP 292

Query: 593 SSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARA 480
           S    PAS PA           PAP  A   P  R  A
Sbjct: 293 SGRPGPASTPAPGAATPAPTATPAPGGALTPPPGRPGA 330

 Score = 39.7 bits (91), Expect = 0.072
 Identities = 29/99 (29%), Positives = 37/99 (37%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQA 594
           A+ PPR     P    P    +   PP PP   ++P P P+     H+    P       
Sbjct: 86  AAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPP------ 139

Query: 593 SSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAP 477
                PA++PA    P    PA AP HA   P   A  P
Sbjct: 140 ---APPAARPA--PTPPAPPPAAAPQHAPPPPPPPAARP 173

 Score = 39.7 bits (91), Expect = 0.072
 Identities = 34/107 (31%), Positives = 41/107 (37%), Gaps = 7/107 (6%)
 Frame = -1

Query: 764 PPRCMPHSPSQ---LRPERPNSETKPPTPPRHRRRPQPHPSPP--SPTHSSANRPAKSA- 603
           PP   P  PS      P++      PP PP  R  P P   PP  +P H+    P  +A 
Sbjct: 113 PPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAAR 172

Query: 602 -TQASSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAPLQAA 465
            T       PA   A  T   T  P P  A   A+P  R  +P  AA
Sbjct: 173 PTPTPPPPPPAGPAARPTPAPTATPTPV-APPPAAPTARPGSPAPAA 218

 Score = 38.9 bits (89), Expect = 0.12
 Identities = 30/110 (27%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
 Frame = -1

Query: 764 PPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPT------HSSANRPAKSA 603
           PP+  P +     P RP +      PP     P P  +PP P          A RPA   
Sbjct: 51  PPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPP 110

Query: 602 TQASSCVSPASQPA*RTKPDTHIPA---PAPAHAHASPYTRARAPLQAAQ 462
                       P     P  H P    PAP  A  +P   A  P  A Q
Sbjct: 111 PPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQ 160

 Score = 38.5 bits (88), Expect = 0.16
 Identities = 63/228 (27%), Positives = 76/228 (32%), Gaps = 11/228 (4%)
 Frame = -3

Query: 768 PTP*MYAPQPLTITSRTPEQRNQAANTPTPPPPPATTPISSVSNPQ-----LRQPTRKVS 604
           P P     QP    +  P+Q    A TP PP PPA  P  +   P         P     
Sbjct: 112 PPPPAAPKQPSPPPAAAPQQH---APTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPP 168

Query: 603 NASKLMRQPSQPASLANKARHTHTRARARTRTRFSLHASPSPLTSRPGCCVRSWWRAARR 424
            A++    P  P      AR T     A T T   +   P+  T+RPG    +   A   
Sbjct: 169 PAARPTPTPPPPPPAGPAARPTP----APTATPTPVAPPPAAPTARPGSPAPAATPAPTP 224

Query: 423 TRRCALRRRYSQRAAPQTWC*RGRRPGLGRR**AEG*APPPGCAGPQP*SAGRCCA---- 256
           T         +   AP      G  PG          APPPG     P +AG   A    
Sbjct: 225 TPAPTATPAPTATPAP------GSTPGAPPA--GRPGAPPPGVRPGSPPAAGSPPAPGAT 276

Query: 255 P*HTRRSCPRHCQRQSTGCPG--STCGHGREGPALHARTGP*CSLTGP 118
           P  T    P       +G PG  ST   G   PA  A   P  +LT P
Sbjct: 277 PAPTTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATPAPGGALTPP 324

 Score = 37.7 bits (86), Expect = 0.27
 Identities = 36/117 (30%), Positives = 41/117 (34%), Gaps = 10/117 (8%)
 Frame = -1

Query: 764 PPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKS------A 603
           PP   P  P    P  P +  K P+PP     PQ H   P P    A RPA +      A
Sbjct: 101 PPAARPAPPP---PPPPPAAPKQPSPPP-AAAPQQHAPTPPPPAPPAARPAPTPPAPPPA 156

Query: 602 TQASSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRAR----APLQAAQAVACGA 444
                   P   PA R  P    P PA   A  +P   A     AP  AA     G+
Sbjct: 157 AAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGS 213

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 31/103 (30%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSP----PSPTHSSANRPAKS 606
           A+ P    P  P       P     PP  P  R  P P  +P    P P   +A RP   
Sbjct: 156 AAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTA-RPGSP 214

Query: 605 ATQASSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAP 477
           A  A+   +P   P   T   T  PAP      A P  R  AP
Sbjct: 215 APAATPAPTPTPAPT-ATPAPTATPAPGSTPG-APPAGRPGAP 255

 Score = 34.7 bits (78), Expect = 2.3
 Identities = 24/89 (26%), Positives = 34/89 (37%)
 Frame = -1

Query: 737 SQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQASSCVSPASQPA* 558
           +Q +P+    + KP  PP+    P     P +P   +A  PA +     +   PA+ P  
Sbjct: 35  AQAQPQETGPDGKPKQPPKG---PPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPR 91

Query: 557 RTKPDTHIPAPAPAHAHASPYTRARAPLQ 471
              P    P PA   A   P     AP Q
Sbjct: 92  PAAPPPPPPPPAARPAPPPPPPPPAAPKQ 120

>gb|AAC72983.1| Wolf-Hirschhorn syndrome candidate 2 protein homolog [Mus musculus]
          Length = 521

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 45/118 (38%), Positives = 59/118 (49%), Gaps = 10/118 (8%)
 Frame = -1

Query: 794 LGGKQTYASLPPRC-MPHSPSQLRPER--PNSETKPPTPPRHRRRPQPHPSPPSPTHSSA 624
           LG   +  +LP    +P +PS +      P+SET P TP R   RP   PS PSPT  + 
Sbjct: 303 LGSLNSEPTLPSTSYLPSTPSVVPASSYIPSSETPPATPSREASRPPEEPSAPSPTLPTQ 362

Query: 623 NRPAKSATQASSCVSPASQPA*RTKPDTHIPAPA-------PAHAHASPYTRARAPLQ 471
            +  + A   +S VSPA+ PA  T P TH   PA       P  A  +P T+A AP+Q
Sbjct: 363 FK--QRAPMYNSGVSPAT-PAAPTSPRTHTTPPAVTPTAQTPPVAMVAPQTQAPAPVQ 417

>pir||PQ0479 pistil extensin-like protein (clone pMG14) - common tobacco
           (fragment) gi|19927|emb|CAA78393.1| pistil extensin like
           protein [Nicotiana tabacum]
          Length = 393

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -1

Query: 785 KQTYASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKS 606
           K +  S P +  P  PS  +P  P+  TK P PP     P   P PP P  +S+  PAK 
Sbjct: 101 KPSSPSPPVKPPPPPPSPCKPSPPDQSTKQPPPP----PPSKQPPPPPPVKASSPSPAKQ 156

Query: 605 ATQASSCV-SPASQPA*RTKPDTHIPAPAPA 516
                  V SP+  PA ++ P    P+P+PA
Sbjct: 157 PPPPPPPVKSPSPSPAKQSPPPPRAPSPSPA 187

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
 Frame = -1

Query: 767 LPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQP------HPSPPSPTHSSANRPAKS 606
           LPP       ++ +P  P+   KPP PP    +P P       P PP P   S   P   
Sbjct: 88  LPPIGGGPPVNRPKPSSPSPPVKPPPPPPSPCKPSPPDQSTKQPPPPPP---SKQPPPPP 144

Query: 605 ATQASSCVSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAPLQAAQ 462
             +ASS  SPA QP     P    P+P+PA   + P  RA +P  A Q
Sbjct: 145 PVKASS-PSPAKQPP-PPPPPVKSPSPSPA-KQSPPPPRAPSPSPATQ 189

 Score = 40.8 bits (94), Expect = 0.032
 Identities = 29/101 (28%), Positives = 39/101 (37%)
 Frame = -1

Query: 764 PPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQASSC 585
           PP   P  P  ++   P+   +PP PP   + P P P+  SP    A  P          
Sbjct: 135 PPSKQPPPPPPVKASSPSPAKQPPPPPPPVKSPSPSPAKQSPPPPRAPSP---------- 184

Query: 584 VSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAPLQAAQ 462
            SPA+QP  +  P        P    A P   A +P  AA+
Sbjct: 185 -SPATQPPIKQPPPPSAKKSPPPPV-AYPPVMAPSPSPAAE 223

 Score = 33.5 bits (75), Expect(2) = 0.13
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 767 LPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPT 636
           LPP  +P     L  + P     PP+PP     P P P PPSP+
Sbjct: 5   LPPAEIPLPEIPLPFDGPTFVLPPPSPPPPPPSPLPSPPPPSPS 48

 Score = 24.3 bits (51), Expect(2) = 0.13
 Identities = 21/81 (25%), Positives = 29/81 (34%), Gaps = 3/81 (3%)
 Frame = -2

Query: 637 PTAPPTDPQSQQRKQAHASAQPASQPSEQSPTHTYPRPRPHTHTLLPTREP---EPPYKP 467
           P  PP        +   +S  P  +P    P+   P P P   T  P   P   +PP  P
Sbjct: 86  PDLPPIGGGPPVNRPKPSSPSPPVKPPPPPPSPCKPSP-PDQSTKQPPPPPPSKQPPPPP 144

Query: 466 PRLLRAELVEGGAPNTAMCAP 404
           P       V+  +P+ A   P
Sbjct: 145 P-------VKASSPSPAKQPP 158

>ref|NP_253724.1| hypothetical protein [Pseudomonas aeruginosa PA01]
           gi|11350349|pir||F83015 hypothetical protein PA5037
           [imported] - Pseudomonas aeruginosa (strain PAO1)
           gi|9951327|gb|AAG08422.1|AE004917_1 hypothetical protein
           PA5037 [Pseudomonas aeruginosa PAO1]
          Length = 551

 Score = 53.1 bits (126), Expect = 6e-06
 Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
 Frame = -1

Query: 740 PSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQASSCVSP-ASQP 564
           PS   P   +S   P TP  +      HP PP+PT  +A     + TQ  +  +P AS P
Sbjct: 356 PSAAVPPTVSSSAPPVTPLANNGVTPMHPVPPAPTEPTAPAATPTPTQTPAPAAPVASAP 415

Query: 563 A*RTKPDTHIPAPAPAHAHAS-PYTRARAPLQAAQAVACGAGGGRRAEHGDVRSDGDILN 387
           A  +KP    PAPAPA   AS P T A A    A A    +GGG  ++    +S G+   
Sbjct: 416 A--SKP---APAPAPAKPAASKPATTAAAKPAPAPAAKPASGGGAGSQWYRNQSGGNFAL 470

Query: 386 GQLLKHGVDA---VGVQVWEGGDEQRDELRHQGAP 291
            Q+L  G +A     ++   GGD +  +   QG P
Sbjct: 471 -QILGTGSEANAQAFIRQQGGGDFRYFKKTLQGKP 504

>ref|XP_352404.1| similar to contains similarity to cell wall-plasma membrane linker
            protein~gene_id:MKA23.5 [Homo sapiens]
          Length = 1000

 Score = 50.4 bits (119), Expect(2) = 8e-06
 Identities = 53/190 (27%), Positives = 75/190 (38%), Gaps = 32/190 (16%)
 Frame = -2

Query: 871  PPYAHSPVCTLLTGSTSLMQARQKNCWEGNKHTRPYPLDVCPTAPHN-----YVPNARTA 707
            P   H P  ++LT  T+  + RQ+     +  T P      P  PH        P A ++
Sbjct: 559  PQRPHRPD-SVLTAPTASSRPRQRPHGPHSVLTVPTASSPRPQRPHRPDSVLTAPTASSS 617

Query: 706  KPSR----QHPHATAAARNHTHLLRLQPTAPPTDPQSQQRKQAHASAQPASQPSEQSP-- 545
             P R    Q PH      +  H +   PTAP   PQ   R  +  +A  AS P  Q P  
Sbjct: 618  PPQRPQRPQRPHCP----DSVHSVLTVPTAPSPRPQRPHRPDSSLAASTASSPRPQRPHR 673

Query: 544  ---------THTYPRPRPH-THTLL--PTR---EPEPPYKPPRLLRAELVEGGAP----- 425
                       + PR RPH  H++L  PT     P+ P++P  +L         P     
Sbjct: 674  PDSSLAASTASSRPRQRPHGPHSVLTVPTASSPRPQRPHRPDSVLTVPTASSPPPQRPHR 733

Query: 424  -NTAMCAPTA 398
             ++A+ APTA
Sbjct: 734  VHSALTAPTA 743

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 23/140 (16%)
 Frame = -2

Query: 775 TRPYPLDVCPTAPHNYVPNARTAKPSRQHPHATAAARNHTHLLRLQPTAPPTDPQSQQRK 596
           T P P    P  PH+ +  +    P R+ PH   +       +   PTA    PQ     
Sbjct: 155 TAPSPRPQRPHRPHSALIGSTAPSPPRERPHRPDS-------VLTAPTASSPPPQRPHSP 207

Query: 595 QAHASAQPASQPSEQS----------PTHTYPRP----------RPHTHTLLPTREPEP- 479
            +  +A  AS P  Q           PT + PRP          RPH+    PT    P 
Sbjct: 208 DSVLTASTASSPPRQCPHGVHSVLTVPTVSSPRPQRPQRPQRPHRPHSVLTAPTASSPPR 267

Query: 478 --PYKPPRLLRAELVEGGAP 425
             P++P  +L A      +P
Sbjct: 268 QRPHRPDSVLTASTASSPSP 287

 Score = 40.0 bits (92), Expect = 0.055
 Identities = 41/149 (27%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
 Frame = -2

Query: 775 TRPYPLDVCPTAPHNYVPNARTAKPSRQHPHATAAARNHTHLLRLQPTAPPTDPQSQQRK 596
           T   P   CP   H+ +       P  Q PH     R H+ L  L  TAP   PQ   R 
Sbjct: 453 TASSPSPQCPHRVHSVLTAPTAPSPRPQRPH-----RVHSVLTAL--TAPSPRPQRPHRV 505

Query: 595 QAHASAQPASQPSEQ----------SPTHTYPRP-RPH-THTLL-----PTREPEPPYKP 467
            +  +   AS    Q          +PT +  RP RPH  H++L     P+  P+ P++P
Sbjct: 506 HSVLTVPTASSRRPQRPHRVHSVLTAPTASSQRPQRPHRVHSVLTAPTAPSPRPQRPHRP 565

Query: 466 PRLLRAELVEG------GAPNTAMCAPTA 398
             +L A             P++ +  PTA
Sbjct: 566 DSVLTAPTASSRPRQRPHGPHSVLTVPTA 594

 Score = 37.4 bits (85), Expect = 0.36
 Identities = 40/122 (32%), Positives = 48/122 (38%), Gaps = 23/122 (18%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLR---------PERPNSE----TKPPTP-PRHRRRPQPHPSPPSPT 636
           AS PP   PH P  +          P+RP+      T P  P PR +R  +PH    +PT
Sbjct: 374 ASSPPPQRPHRPDSVLTAPTASSPPPQRPHGVHSVLTAPTAPSPRPQRPHRPHSVLTAPT 433

Query: 635 HSS--ANRP--AKSATQASSCVSPASQPA*R-----TKPDTHIPAPAPAHAHASPYTRAR 483
            SS    RP    S   AS+  SP+ Q   R     T P    P P   H   S  T   
Sbjct: 434 ASSPPPQRPHGVHSVLTASTASSPSPQCPHRVHSVLTAPTAPSPRPQRPHRVHSVLTALT 493

Query: 482 AP 477
           AP
Sbjct: 494 AP 495

 Score = 37.4 bits (85), Expect = 0.36
 Identities = 24/79 (30%), Positives = 33/79 (41%)
 Frame = -1

Query: 773 ASLPPRCMPHSPSQLRPERPNSETKPPTPPRHRRRPQPHPSPPSPTHSSANRPAKSATQA 594
           AS PPR  PH    +      S  +P  P R +R  +PH    +PT SS  R       +
Sbjct: 216 ASSPPRQCPHGVHSVLTVPTVSSPRPQRPQRPQRPHRPHSVLTAPTASSPPRQRPHRPDS 275

Query: 593 SSCVSPASQPA*RTKPDTH 537
               S AS P+ + +   H
Sbjct: 276 VLTASTASSPSPQCRHRVH 294

 Score = 37.0 bits (84), Expect = 0.47
 Identities = 54/208 (25%), Positives = 76/208 (35%), Gaps = 50/208 (24%)
 Frame = -2

Query: 871 PPYAHSPVCTLLTGSTSLMQARQKNCWEGNKHTRPYPLDVCPTA-----------PHNYV 725
           P   HSP  ++LT ST+    RQ  C  G       P    P             PH+ +
Sbjct: 201 PQRPHSPD-SVLTASTASSPPRQ--CPHGVHSVLTVPTVSSPRPQRPQRPQRPHRPHSVL 257

Query: 724 PNARTAKPSRQHPH--------ATAAA-----RNHTH-LLRLQ-----PTAPPTDPQSQQ 602
                + P RQ PH        +TA++     R+  H +L ++     PTA    PQ   
Sbjct: 258 TAPTASSPPRQRPHRPDSVLTASTASSPSPQCRHRVHSVLNVRSVLTAPTASSPRPQRPH 317

Query: 601 RKQAHASAQPASQPSEQSPTH-----------TYPRPRPH-THTLL--------PTREPE 482
           R  +  +A  AS P  Q P H           +     PH  H++L        PT    
Sbjct: 318 RVHSALTAPTASSPPPQRPHHPDSVLTASTASSLSPQCPHCVHSVLNVRSALTAPTASSP 377

Query: 481 PPYKPPRLLRAELVEGGAPNTAMCAPTA 398
           PP +P R           P++ + APTA
Sbjct: 378 PPQRPHR-----------PDSVLTAPTA 394

 Score = 37.0 bits (84), Expect = 0.47
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
 Frame = -1

Query: 743 SPSQLRPERPNSE-TKPPTPPRHRRRPQ-PH-----PSPPSPTHSSANRPAKSATQASSC 585
           SP   RP RP+S  T P    R R+RP  PH     P+  SP     +RP    T  ++ 
Sbjct: 556 SPRPQRPHRPDSVLTAPTASSRPRQRPHGPHSVLTVPTASSPRPQRPHRPDSVLTAPTAS 615

Query: 584 VSPASQPA*RTKPDTHIPAPAPAHAHASPYTRARAPLQAAQAVACGAGGGRRAE 423
            SP  +P    +P       +      +P  R + P +   ++A       R +
Sbjct: 616 SSPPQRPQRPQRPHCPDSVHSVLTVPTAPSPRPQRPHRPDSSLAASTASSPRPQ 669

 Score = 21.9 bits (45), Expect(2) = 8e-06
 Identities = 17/66 (25%), Positives = 24/66 (35%)
 Frame = -3

Query: 312 APPPGCAGPQP*SAGRCCAP*HTRRSCPRHCQRQSTGCPGSTCGHGREGPALHARTGP*C 133
           +PPP C         +C      RR CP+   R  +    ST    +    LH+      
Sbjct: 751 SPPPQCT-----HCPQCPHCYLQRRQCPQRPHRPHSALTASTASCLQRPHCLHSLLTVHS 805

Query: 132 SLTGPS 115
            LT P+
Sbjct: 806 VLTAPT 811



EST assemble image


clone accession position
1 MX031d10_r BP087311 1 579
2 LC072f08_r AV624078 96 650
3 MX250c08_r BP092144 97 321
4 LC100h10_r AV626003 97 442
5 HCL065b03_r AV643178 100 622
6 CM047e08_r AV388599 101 401
7 LC040c05_r AV621732 107 573
8 LC002e02_r AV619003 109 643
9 LC032c02_r AV621171 111 642
10 CM022c12_r AV387821 119 701
11 HC068c04_r AV637067 119 591
12 LCL068e04_r AV629895 119 682
13 MX016e03_r BP086775 127 514
14 MX230a06_r BP090849 130 428
15 CL03f04_r AV393428 131 661
16 LC094g10_r AV625572 136 430
17 CM059d02_r AV390701 210 791
18 HC061g12_r AV636615 234 694
19 CM075b08_r AV391614 449 1029




Chlamydomonas reinhardtii
Kazusa DNA Research Institute