Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000069A_C01 KCC000069A_c01
(548 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42496|PETM_CHLRE Cytochrome B6-F complex 4 kDa subunit, chlo... 186 2e-46
dbj|BAA78590.1| hypothetical protein [Chlamydomonas sp. HS-5] 94 9e-19
gb|AAB35673.1| PetX {N-terminal, cytochrome b6 f complex} [Chlam... 54 1e-06
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 50 2e-05
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 47 2e-04
>sp|Q42496|PETM_CHLRE Cytochrome B6-F complex 4 kDa subunit, chloroplast precursor
(Cytochrome B6-F complex subunit 7)
gi|7484361|pir||T08070 cytochrome b6f complex chain PetM
precursor - Chlamydomonas reinhardtii
gi|1039440|gb|AAC49525.1| cytochrome b6f 4.6 kDa subunit
PetM gi|1050459|emb|CAA63221.1| 4-kDa cytochrome b6/f
subunit [Chlamydomonas reinhardtii]
gi|1589393|prf||2211245A cytochrome b6f:SUBUNIT=4kD
Length = 99
Score = 186 bits (471), Expect = 2e-46
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +1
Query: 16 MAMSIAARSACCGVAAPRSSTVRVAAARPAVRPSLRTAGQKAAPSRGVATKAVNELAMIA 195
MAMSIAARSACCGVAAPRSSTVRVAAARPAVRPSLRTAGQKAAPSRGVATKAVNELAMIA
Sbjct: 1 MAMSIAARSACCGVAAPRSSTVRVAAARPAVRPSLRTAGQKAAPSRGVATKAVNELAMIA 60
Query: 196 GEAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEEGKI 312
GEAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEEGKI
Sbjct: 61 GEAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEEGKI 99
>dbj|BAA78590.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 97
Score = 94.4 bits (233), Expect = 9e-19
Identities = 57/98 (58%), Positives = 75/98 (76%), Gaps = 5/98 (5%)
Frame = +1
Query: 25 SIAARSACCGVAAPRSSTVRVAAARPAV---RPSLR--TAGQKAAPSRGVATKAVNELAM 189
SIAAR+A G+ APR++ RV++ARP + R +LR A ++P+RGVAT A E+A
Sbjct: 3 SIAARAAT-GLTAPRAA--RVSSARPTLSVNRAALRKAAAAPSSSPARGVATAAGVEIAQ 59
Query: 190 IAGEAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEE 303
+AGEA FIAGTA TM+G+TL+GLA+GFVLLRVE+ VEE
Sbjct: 60 VAGEAGFIAGTAFTMIGITLLGLAVGFVLLRVEAAVEE 97
>gb|AAB35673.1| PetX {N-terminal, cytochrome b6 f complex} [Chlamydomonas
reinhardtii, Peptide Partial, 27 aa]
Length = 27
Score = 54.3 bits (129), Expect = 1e-06
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 196 GEAEFIAGTALTMVGMTLVGLAIGFVL 276
GEAEFIAGTALTMVGMTLVGLAIGFVL
Sbjct: 1 GEAEFIAGTALTMVGMTLVGLAIGFVL 27
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 50.1 bits (118), Expect = 2e-05
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 16/183 (8%)
Frame = -2
Query: 529 KRR*IVAKPRHRQ----------VAASPLGGDVPRKSRPAC---PRPIRRRDQRGQHSTP 389
+RR I K RH + VAA G R+ P+ P P RRR Q +P
Sbjct: 270 RRREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRRRSPSQSKSP 329
Query: 388 VANSPRTPLSSQMQTHTRTRVLSELRSCPPQPETPRAAARSQWPDPPGSCRPWSGRCQQ* 209
++ S R R S +S PP P+ RA +RS+ PP R +
Sbjct: 330 APKRAKSRSKSPPAPARRRRSPSASKSPPPAPK--RAKSRSK--SPPARRRRSPSASKSP 385
Query: 208 TQPRRQSWPARSRPWWPHRGWGQPSGRRS*GTGGQLAGQQRRGRS---SCGAQRRRSKPS 38
PRR+ P++SR P R P+ RR + + +R +S S A RRR PS
Sbjct: 386 PAPRRRRSPSKSRSPAPKREI-PPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPS 444
Query: 37 EQR 29
+ +
Sbjct: 445 QSK 447
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 47.0 bits (110), Expect = 2e-04
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 22/190 (11%)
Frame = -2
Query: 538 RRYKRR*IVAKPRHRQVAASPLGGDVPRKSRPACPRP-IRRRDQRGQHST---------- 392
RR ++R PRHR + SP ++ P P P +R +D Q +T
Sbjct: 190 RRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPK 249
Query: 391 -----------PVANSPRTPLSSQMQTHTRTRVLSELRSCPPQPETPRAAARSQWPDPPG 245
P NS + ++ ++ +R++ S RS P PR RS+
Sbjct: 250 PEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSP 309
Query: 244 SCRPWSGRCQQ*TQPRRQSWPARSRPWWPHRGWGQPSGRRS*GTGGQLAGQQRRGRSSCG 65
RP R PRR++ P R P HR P GRR + L+G SS
Sbjct: 310 RRRPSPRRR---PSPRRRTPPRRMPPPPRHRRSRSP-GRRRRRSSASLSGSS----SSSS 361
Query: 64 AQRRRSKPSE 35
+ R RS P +
Sbjct: 362 SSRSRSPPKK 371
Score = 33.1 bits (74), Expect = 2.5
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Frame = -2
Query: 460 PRKSRPACPR--PIRRRDQRGQHSTPVANSPRTPLSSQMQTHTRTRVL------------ 323
PRK+R P P RRR + +TP + +P Q ++RV
Sbjct: 380 PRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTK 439
Query: 322 ---SELRSCPPQPETPRAAARSQWPDPPGSCRPWSGRCQQ*TQPRRQSWPARSRPWWPHR 152
+E R P PR S+ + GS + QQ Q RRQ+ + S
Sbjct: 440 HKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSST 499
Query: 151 GWGQPSGRRS*GTGGQLAGQQRR---GRSSCGAQRRRSKPSEQR 29
+ +RS G++ G++RR RS+ + R+R K + R
Sbjct: 500 SEDE-RPKRSHVKNGEV-GRRRRLSPSRSASPSPRKRQKETSPR 541
Score = 31.2 bits (69), Expect = 9.6
Identities = 37/113 (32%), Positives = 46/113 (39%), Gaps = 13/113 (11%)
Frame = -2
Query: 469 GDVPRK-----SRPACPRPIRR------RDQRGQH-STPVANSPRTPLSSQMQTHTRTRV 326
G+V R+ SR A P P +R R Q G+ +PV S R S R R
Sbjct: 513 GEVGRRRRLSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRS 572
Query: 325 LSELRSCPPQPETPRAAARSQWPDPPGSCR-PWSGRCQQ*TQPRRQSWPARSR 170
S PP P PR R + P PP R P ++ PRR S P + R
Sbjct: 573 PSPAPPPPPPPPPPR---RRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 622
