KCC000056A_c03
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000056A_C03 KCC000056A_c03
GCACCAGGTTGCATCCCTGGTTCCGAGCCTTTTACCAGTTTGCATTCGCAAGCACGCAGT
GCCACCCACCTGCCGGCACACCAATATGCTACTGAGGATGCGAACACTGACGTTGCTTGG
CACCAGCGTTCCGTCAGCAGTCTGCATAGGAATAATGACGAATGCTACGTGGGCAACTGA
CAACGGCGGTGCGTGCAGTGACTAACAGTTAGAGTCATACAGAGCAGCTACTAGCCTCTA
GGGCTCATCCCCTAGCCCGCGAGCCTTGGCTCGCGTGGGGGCGCACAACATCTTAGTTGT
CGACCTTGGCTTTCGTTTCCAAATTTTTGTCGCCTGTTCCGGGCGCTTTGATCAGATTGG
TTCAGACAGGGTTGGGGTTCAGACAGGCGCTCAGCGCCGAGCTTTGGGTTCGAAGTTCCA
TGGCGGCTCGCGGGCGGCTGGTCGCATGAGTTCTTCGGTGTTGTGTTGTCAGTGGTTTCT
GTGTTTGCAGGTAGTGGGTAGCCCTCGTGGTCGCCCTTGGCCCGGCGCAACGGCTGGCGC
ATCGGTGCCTCGCCTGTGTGCGCCTCGGCGTCTTGCCTCGTGGCGCCCAGTCAGCCGTCG
TCTCTGTCTGCGGTCTTCCTGGCTCTGCAGATTTTAGCCCTGGGGGTTTTAGCTCGCAGC
ATACGGTTCACGGACCGGTAGGCGCGTGGTGACCGCAGTCGGGTAGTCCCGGGTTTGGGG
TGTGTGTGCACGGGCGGCTGTTGCCCGGGCGCCCGGGCGACTGTTGGCTCTTCTCGTCTC
CGAGTGCCGCTGGGGCTTGTGTGGAGGGTCGGCCTGGGTCGTTGGTTGGACGGATGGTGG
GTGGTGCGCCCTTTGAGAGGGGCTGTGGTGTGCTGTGGCTTGGTGGTGTTTCGGCTTGGC
TTCCGGTTCCAGTTGTGCCTCGGCACAGACTATCAGACATAGGCCTTCGGGCCAAGACAT
TGCGCGTCTCTGACGCCAGCCATCGTCTTCGGACGTGATATTTGTGTGGTGCTTGCGTTT
GATGGGGCTGTCGGCAGACCACTGGCCTGTCGTGCCTTGTTTTGCGTTGGTGCTGCCGCC
AAAAGACCTAAAAGTGATGAGGGGTGTTACGTGGCGGTGGGGCTTTGGCGGGCTTCGGCT
TGGCTTCGACTCATGCGCGTACCGCTATGAAGGTCGGCAGTCAACCAGGGGGTGGGTGTT
TCTCTCTGGGCCGGAGACGGTCCCTCGCGGCGTGGGTACGGTGTGCCCCCGCTTGTCGGA
CTGTCCCTTCAATTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000056A_C03 KCC000056A_c03
         (1276 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD39047.1| hypothetical protein [Homo sapiens]                    59  2e-07
ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens...    59  2e-07
sp|P21917|D4DR_HUMAN D(4) dopamine receptor (D(2C) dopamine rece...    54  8e-06
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    53  1e-05
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho...    52  3e-05

>emb|CAD39047.1| hypothetical protein [Homo sapiens]
          Length = 845

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 69/274 (25%), Positives = 108/274 (39%), Gaps = 16/274 (5%)
 Frame = -2

Query: 1254 KRGHTVPTPRGTVSGPERNTHPLVDCRPS*RYAHESKPSRSP--PKPHRHVTPLITFRSF 1081
            +R H  P+ R    GP   +H    C PS R  H S   RS   P   RH +P  + RS 
Sbjct: 528  ERRHRSPSQRSH-RGPSERSH----CSPSER-RHRSPSQRSHRGPSERRHHSP--SKRSH 579

Query: 1080 GGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGLCLIVCAEAQLEPE 901
                     +  + S  SP +R HH+          +R   S P        +E +    
Sbjct: 580  RSPARRSHRSPSERSHHSPSERSHHSPSERRHHSPSERSHCS-PSERSHCSPSERRHRSP 638

Query: 900  AKPKHHQAT--AHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANSRPGARAT---- 739
            ++ +HH  +  +HHSPS+R+HH PS +   +   P +  RHS   R++  P  R +    
Sbjct: 639  SERRHHSPSEKSHHSPSERSHHSPSER---RRHSPLERSRHSLLERSHRSPSERRSHRSF 695

Query: 738  -------AARAHTPQTRDYPTAV-TTRLPVREPYAAS*NPQG*NLQSQEDRRQRRRLTGR 583
                   + R+H+P  + + + +  +R    E    S    G    S  +R  R     R
Sbjct: 696  ERSHRRISERSHSPSEKSHLSPLERSRCSPSERRGHS--SSGKTCHSPSERSHRSPSGMR 753

Query: 582  HEARRRGAHRRGTDAPAVAPGQGRPRGLPTTCKH 481
                   +HR   +    +P + RP G P+   H
Sbjct: 754  QGRTSERSHRSSCERTRHSPSEMRP-GRPSGRNH 786

 Score = 41.2 bits (95), Expect = 0.040
 Identities = 48/202 (23%), Positives = 78/202 (37%), Gaps = 18/202 (8%)
 Frame = -2

Query: 1254 KRGHTVPTPRGTVSGPERNTHPLVDCR-----------PS*RYAHE-SKPSRSPPKPHRH 1111
            +R    P+ R   S PER+ H L +             PS R  H  S+ S   P    H
Sbjct: 464  ERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSH 523

Query: 1110 VTPLITFRSFGGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGLCLI 931
             +P  + R     +        + S  SP +R+H +       G  +RR  S        
Sbjct: 524  RSP--SERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHS-------- 573

Query: 930  VCAEAQLEPEAKPKHHQAT--AHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANSR 757
              ++      A+  H   +  +HHSPS+R+HH PS +   +   P +    S + R++  
Sbjct: 574  -PSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSER---RHHSPSERSHCSPSERSHCS 629

Query: 756  PGAR----ATAARAHTPQTRDY 703
            P  R     +  R H+P  + +
Sbjct: 630  PSERRHRSPSERRHHSPSEKSH 651

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 4/236 (1%)
 Frame = -2

Query: 1119 HRHVTPLITFRSFGGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGL 940
            HRH+   +T +     +  ++ T        P +R  H      +  WR  R+ S     
Sbjct: 388  HRHLKDKLTHKEHNHPSFYRERTPR-----GPSERTRH------NPSWRNHRSPS----- 431

Query: 939  CLIVCAEAQLEPEAKPKHHQATAHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANS 760
                        E   +      HHSPSQR+H  PS +    + P  +  R S ++R + 
Sbjct: 432  ------------ERSQRSSLERRHHSPSQRSHCSPSRK--NHSSPSERSWR-SPSQRNHC 476

Query: 759  RPGARATAARA----HTPQTRDYPTAVTTRLPVREPYAAS*NPQG*NLQSQEDRRQRRRL 592
             P  R+  + +    H+P  R +      R P +  +    +P   + +S  +R  R   
Sbjct: 477  SPPERSCHSLSERGLHSPSQRSH------RGPSQRRHH---SPSERSHRSPSERSHRSPS 527

Query: 591  TGRHEARRRGAHRRGTDAPAVAPGQGRPRGLPTTCKHRNH*QHNTEELMRPAAREP 424
              RH +  + +HR  ++    +P + R R  P+   HR   +       + + R P
Sbjct: 528  ERRHRSPSQRSHRGPSERSHCSPSERRHRS-PSQRSHRGPSERRHHSPSKRSHRSP 582

>ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens]
            gi|12053293|emb|CAB66832.1| hypothetical protein [Homo
            sapiens]
          Length = 939

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 69/274 (25%), Positives = 108/274 (39%), Gaps = 16/274 (5%)
 Frame = -2

Query: 1254 KRGHTVPTPRGTVSGPERNTHPLVDCRPS*RYAHESKPSRSP--PKPHRHVTPLITFRSF 1081
            +R H  P+ R    GP   +H    C PS R  H S   RS   P   RH +P  + RS 
Sbjct: 622  ERRHRSPSQRSH-RGPSERSH----CSPSER-RHRSPSQRSHRGPSERRHHSP--SKRSH 673

Query: 1080 GGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGLCLIVCAEAQLEPE 901
                     +  + S  SP +R HH+          +R   S P        +E +    
Sbjct: 674  RSPARRSHRSPSERSHHSPSERSHHSPSERRHHSPSERSHCS-PSERSHCSPSERRHRSP 732

Query: 900  AKPKHHQAT--AHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANSRPGARAT---- 739
            ++ +HH  +  +HHSPS+R+HH PS +   +   P +  RHS   R++  P  R +    
Sbjct: 733  SERRHHSPSEKSHHSPSERSHHSPSER---RRHSPLERSRHSLLERSHRSPSERRSHRSF 789

Query: 738  -------AARAHTPQTRDYPTAV-TTRLPVREPYAAS*NPQG*NLQSQEDRRQRRRLTGR 583
                   + R+H+P  + + + +  +R    E    S    G    S  +R  R     R
Sbjct: 790  ERSHRRISERSHSPSEKSHLSPLERSRCSPSERRGHS--SSGKTCHSPSERSHRSPSGMR 847

Query: 582  HEARRRGAHRRGTDAPAVAPGQGRPRGLPTTCKH 481
                   +HR   +    +P + RP G P+   H
Sbjct: 848  QGRTSERSHRSSCERTRHSPSEMRP-GRPSGRNH 880

 Score = 41.2 bits (95), Expect = 0.040
 Identities = 48/202 (23%), Positives = 78/202 (37%), Gaps = 18/202 (8%)
 Frame = -2

Query: 1254 KRGHTVPTPRGTVSGPERNTHPLVDCR-----------PS*RYAHE-SKPSRSPPKPHRH 1111
            +R    P+ R   S PER+ H L +             PS R  H  S+ S   P    H
Sbjct: 558  ERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSH 617

Query: 1110 VTPLITFRSFGGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGLCLI 931
             +P  + R     +        + S  SP +R+H +       G  +RR  S        
Sbjct: 618  RSP--SERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHS-------- 667

Query: 930  VCAEAQLEPEAKPKHHQAT--AHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANSR 757
              ++      A+  H   +  +HHSPS+R+HH PS +   +   P +    S + R++  
Sbjct: 668  -PSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSER---RHHSPSERSHCSPSERSHCS 723

Query: 756  PGAR----ATAARAHTPQTRDY 703
            P  R     +  R H+P  + +
Sbjct: 724  PSERRHRSPSERRHHSPSEKSH 745

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 4/236 (1%)
 Frame = -2

Query: 1119 HRHVTPLITFRSFGGSTNAKQGTTGQWSADSPIKRKHHTNITSEDDGWRQRRAMSWPEGL 940
            HRH+   +T +     +  ++ T        P +R  H      +  WR  R+ S     
Sbjct: 482  HRHLKDKLTHKEHNHPSFYRERTPR-----GPSERTRH------NPSWRNHRSPS----- 525

Query: 939  CLIVCAEAQLEPEAKPKHHQATAHHSPSQRAHHPPSVQPTTQADPPHKPQRHSETRRANS 760
                        E   +      HHSPSQR+H  PS +    + P  +  R S ++R + 
Sbjct: 526  ------------ERSQRSSLERRHHSPSQRSHCSPSRK--NHSSPSERSWR-SPSQRNHC 570

Query: 759  RPGARATAARA----HTPQTRDYPTAVTTRLPVREPYAAS*NPQG*NLQSQEDRRQRRRL 592
             P  R+  + +    H+P  R +      R P +  +    +P   + +S  +R  R   
Sbjct: 571  SPPERSCHSLSERGLHSPSQRSH------RGPSQRRHH---SPSERSHRSPSERSHRSPS 621

Query: 591  TGRHEARRRGAHRRGTDAPAVAPGQGRPRGLPTTCKHRNH*QHNTEELMRPAAREP 424
              RH +  + +HR  ++    +P + R R  P+   HR   +       + + R P
Sbjct: 622  ERRHRSPSQRSHRGPSERSHCSPSERRHRS-PSQRSHRGPSERRHHSPSKRSHRSP 676

>sp|P21917|D4DR_HUMAN D(4) dopamine receptor (D(2C) dopamine receptor)
           gi|291946|gb|AAB59386.1| dopamine receptor D4 [Homo
           sapiens] gi|4325160|gb|AAD17291.1| dopamine receptor
           D4-7 [synthetic construct]
          Length = 467

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 62/201 (30%), Positives = 74/201 (35%), Gaps = 9/201 (4%)
 Frame = -1

Query: 988 RRWLASETRNVLARRPMSDSLCRGTTGTGSQAETPPSHSTPQ-PLSKG-APPTIRPTNDP 815
           +RW  +    +  R P      R  +G G  + TPP+   PQ P     APP       P
Sbjct: 220 QRWEVARRAKLHGRAP------RRPSGPGPPSPTPPAPRLPQDPCGPDCAPPA------P 267

Query: 814 GRPSTQAPAALGDEKSQQSPGRPGNS-RPCTHTPNPGLP------DCGHHAPTGP*TVCC 656
           G P        G + +  +PG P +   P    P PGLP      DC   AP  P   C 
Sbjct: 268 GLPR----GPCGPDCAPAAPGLPPDPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPRGPC- 322

Query: 655 ELKPPGLKSAEPGRPQTETTADWAPRGKTPRRTQARHRCASRCAGPRATTRATHYLQTQK 476
               P      PG PQ     D AP    P        C S CA P A   A    QT  
Sbjct: 323 ---GPDCAPPAPGLPQDPCGPDCAP----PAPGLPPDPCGSNCAPPDAVRAAALPPQT-P 374

Query: 475 PLTTQHRRTHATSRPRAAMEL 413
           P T + RR   T R R AM +
Sbjct: 375 PQTRRRRRAKITGRERKAMRV 395

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
            [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
            elegans RSR-1 protein (corresponding sequence F28D9.1)
            [Caenorhabditis elegans]
          Length = 601

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 58/233 (24%), Positives = 96/233 (40%), Gaps = 11/233 (4%)
 Frame = -3

Query: 1268 RDSPTSGGTPYPRREGPSPAQRETPTPWLTADLHSGTRMSRSQAEARQSPTAT*HP---S 1098
            R SP++  +P P R   SP+Q ++P P       S ++   + A  R+SP+A+  P    
Sbjct: 305  RRSPSASKSPPPARRRRSPSQSKSPAP---KRAKSRSKSPPAPARRRRSPSASKSPPPAP 361

Query: 1097 SLLGLLAAAPTQNKARQASGLPTAPSNASTTQISRPKTMAGVRD----AQCLGPKAYV** 930
                  + +P   + R  S   + P+       S+ ++ A  R+     +   P A    
Sbjct: 362  KRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSP 421

Query: 929  SVPRHNWNRKPS----RNTTKPQHTTAPLKGRTTHHPSNQRPRPTLHTSPSGTRRREEPT 762
              P+   +R  S    R    P  + +P   R    PS     P    SPSG++ R  P 
Sbjct: 422  PAPKRAKSRSKSPPAPRRRRSPSQSKSPAP-RRRRSPSKSPQAPRRRRSPSGSKSR-SPR 479

Query: 761  VARAPGQQPPVHTHPKPGTTRLRSPRAYRSVNRMLRAKTPRAKICRARKTADR 603
              R+P   P     P+    R RSPR  RS +   R+++P     R R+ +++
Sbjct: 480  RRRSPAAAPRRRQSPQ----RRRSPRRRRSPSSSSRSRSPPPPPRRPRQDSEQ 528

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 77/341 (22%), Positives = 112/341 (32%), Gaps = 9/341 (2%)
 Frame = -3

Query: 1259 PTSGGTPYPRREGPSPAQRETPTPWLTADLHSGTRMSRSQAEARQSPTAT*HPSSLLGLL 1080
            P  GG    RRE   P + E      +       +    +AE RQ   A+      +   
Sbjct: 243  PARGGDRRDRREDRRPVRDEKEREEESRRREIERKKRHEEAELRQKAIAS------VAAR 296

Query: 1079 AAAPTQNKARQASGLPTAPSNASTTQISRPKTMAGVR-DAQCLGPKAYV**SVPRHNWNR 903
            A + +  + R  S   + P        S+ K+ A  R  ++   P A             
Sbjct: 297  AKSGSPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPA------------- 343

Query: 902  KPSRNTTKPQHTTAP------LKGRTTHHPSNQRPRPTLHTSPSGTRRREEPTVARAPGQ 741
             P+R    P  + +P       K R+   P+ +R  P+   SP   RRR  P+ +R+P  
Sbjct: 344  -PARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAP 402

Query: 740  QPPVHTHPKPGTTRLRSPRAYRSVNRMLRAKTPRAKICRARKTADRDDG*LGATRQDAEA 561
            +  +     P   R RSP A +S     RAK+ R+K   A                    
Sbjct: 403  KREI-----PPARRRRSPSASKSPPAPKRAKS-RSKSPPA-------------------- 436

Query: 560  HTGEAPMRQPLRRAKGDHEGYPLPANTETTDNTTPKNSCDQPPASRHGTSNPKLGAERLS 381
                     P RR        P P         +P  S   P   R  + +      R  
Sbjct: 437  ---------PRRRRSPSQSKSPAPRR-----RRSPSKSPQAPRRRRSPSGSKSRSPRRRR 482

Query: 380  EP--QPCLNQSDQSARNRRQKFGNESQGRQLRCCAPPREPR 264
             P   P   QS Q  R+ R++    S  R      PPR PR
Sbjct: 483  SPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPR 523

>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2296

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 76/340 (22%), Positives = 123/340 (35%), Gaps = 29/340 (8%)
 Frame = -2

Query: 1233 TPRGTVSGPERNTHPLVDCRPS*RYAHESKPSRSPPKPHRHVTPLITFRSFGGSTNAKQG 1054
            +PR + SG            P  +   +S P    P P       +  RS  GS++  +G
Sbjct: 1592 SPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRA-----LPRRSRSGSSSKGRG 1646

Query: 1053 TTGQWSADSPIKRKHHTNITSEDDGWR---QRRAMSWPEGLCLIVCAEAQLEPEAKPKHH 883
             + + S+ +    +H     +   G R   + +  S          +  +L  +A+    
Sbjct: 1647 PSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRR 1706

Query: 882  QATAHHSPSQRAHHPPSVQ--PTTQADPPHKPQRHSETRRANSRPGARATAARAHTP--- 718
              +A  SP  R+  PP  +  P+  +  P +  R S  RR+ S P  + T+ R  +P   
Sbjct: 1707 SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766

Query: 717  -----QTRDYPTAVTTRLPVREPYAAS*NPQG*NLQSQEDRRQRRRLTGRHEARRRGAHR 553
                 ++R       TR   R   + S        QS   RRQR R   R   RRRG   
Sbjct: 1767 PRGLQRSRSRSRREKTRTTRRRDRSGS-------SQSTSRRRQRSRSRSRVTRRRRGGSG 1819

Query: 552  RGTDAPAVAPG--------QGRPRGLPTTCKHRNH*QHNTEELMRPAAREPPWNFEPKAR 397
              + +PA            +GR R  P T + R+  + +     R  +R  P        
Sbjct: 1820 YHSRSPARQESSRTSSRRRRGRSR-TPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS 1878

Query: 396  R*APV*TPTLS--------EPI*SKRPEQATKIWKRKPRS 301
            R     TP +S         P+  +R    T + +R+ RS
Sbjct: 1879 R-----TPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 77/347 (22%), Positives = 125/347 (35%), Gaps = 17/347 (4%)
 Frame = -3

Query: 1244 TPYPRREGPSPAQRETPTPWLTADLHSGTRMSRSQAEARQSPTAT*HPSSLLGLLAAAPT 1065
            +P P R    P +   PTP L A+ H G+    +     Q P    +P S      A+PT
Sbjct: 351  SPSPERSSTGP-EPPAPTP-LLAERHGGSPQPLATTPLSQEPV---NPPS-----EASPT 400

Query: 1064 QNKA--RQASGLPTAPSNASTTQISRPKTMAGVRDAQCLGPKAYV**SVPRHNWNRKPSR 891
            ++++  +    LP + S+ S+    +P  ++    +    PK       P    +R+ S 
Sbjct: 401  RDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKP-----APAPGSHREISS 455

Query: 890  NTTKPQHTTAPLKGRTTHHPSNQRPRPTLHTSPSGTRRREEPTVARAPGQQPPVHTHPKP 711
            + T    +          H   +R +   HT      R   P  A+    +    T  K 
Sbjct: 456  SPTSKNRS----------HGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRS--RTPTKR 503

Query: 710  GTTRLRSP--RAYRSVNRMLRAKTP----------RAKICRARKTADRD---DG*LGATR 576
            G +R RSP  R  RS  R  R+++P          R    R+R T  R        G + 
Sbjct: 504  GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH 563

Query: 575  QDAEAHTGEAPMRQPLRRAKGDHEGYPLPANTETTDNTTPKNSCDQPPASRHGTSNPKLG 396
              + A  G +  R P RR +        PA   +   T  +        +R G S  +  
Sbjct: 564  SRSPATRGRSRSRTPARRGRSRSR---TPARRRSRSRTPTRRRSRSRTPARRGRSRSRTP 620

Query: 395  AERLSEPQPCLNQSDQSARNRRQKFGNESQGRQLRCCAPPREPRLAG 255
            A R S  +  + +  +S    R+   + S+    R  +  R P   G
Sbjct: 621  ARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRG 667

 Score = 39.3 bits (90), Expect = 0.15
 Identities = 66/310 (21%), Positives = 110/310 (35%), Gaps = 16/310 (5%)
 Frame = -3

Query: 1151 SRSQAEARQSPTAT*HPSSLLGLLAAAPTQNKARQASGLPTAPSNASTTQISRPKTMAGV 972
            SRS+  AR+  + +  P+      +  PT+ ++R  +      S + T    R +T + V
Sbjct: 573  SRSRTPARRGRSRSRTPARRRSR-SRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPV 631

Query: 971  RDAQCLGPKAYV**SVPRHNWNRKPSRNTTKPQHTTAPLKGRTTHHPSNQRPRPTLHTSP 792
            R                R + +R P+R + + +  T   +GR+      +R R    T  
Sbjct: 632  R----------------RRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPA 675

Query: 791  SGTRRREEPTVARAPGQQPPVHTHPKPGTTRLRSPRAYRSVNRML------RAKTP---- 642
              + R    T AR              G +R R+PR  RS +R L       ++TP    
Sbjct: 676  RRSGRSRSRTPARR-------------GRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 722

Query: 641  RAKICRARKTADRDDG*LGATRQDAEAHTGEAPMR--QPLRRAKGDHEGYPLPANTETTD 468
            R+     RK   R       +    E        R  + L   +   +       + +  
Sbjct: 723  RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGS 782

Query: 467  NTTPKNSCDQPP-ASRHGTSNPKLGAE---RLSEPQPCLNQSDQSARNRRQKFGNESQGR 300
            +  PK     PP  SR G+S PK  +    R S          +S    RQ   + S   
Sbjct: 783  SPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHP 842

Query: 299  QLRCCAPPRE 270
            +++   PPR+
Sbjct: 843  KVKSGTPPRQ 852

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 18/180 (10%)
 Frame = -1

Query: 991  RRRWLASETRNVLARRPMSDSLCRGTTGTGSQAETPPSHSTPQPLSKGAPPTIRPTNDPG 812
            RR    S     L  R  S   C G++    ++ TPP  S  +  S    P ++    P 
Sbjct: 869  RRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSR--SSSPQPKVKAIISPR 926

Query: 811  RPSTQAPAALGDEK--SQQSPGRPGNSRPCTHTPNPGLPDCGHHAPTGP*TVCCELKP-- 644
            + S    ++    +  S+ +P R  +  PC++  +  LP   H   + P T   ++KP  
Sbjct: 927  QRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDT---KVKPET 983

Query: 643  -------------PGLKSAEPGRPQTETTADWAPRGKT-PRRTQARHRCASRCAGPRATT 506
                         P +K+  P  P    +    P+ K+     Q+     S CAG +++T
Sbjct: 984  PPRQSHSGSISPYPKVKAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSST 1043



EST assemble image


clone accession position
1 CM085h12_r AV392412 1 461
2 CM011h10_r AV386920 1 423
3 CM098d08_r AV392875 122 584
4 HC097a05_r AV639256 137 542
5 CM087h04_r AV392472 188 628
6 CM098g06_r AV392932 198 643
7 LC058g12_r AV623093 199 731
8 LC007a05_r AV619345 213 693
9 LC027d05_r AV620828 216 727
10 CM052c06_r AV390553 217 774
11 CM061e09_r AV390592 219 786
12 LC069d01_r AV623837 220 710
13 CM050f07_r AV389767 223 517
14 MX010d10_r BP086508 224 566
15 CM034h02_r AV388638 230 683
16 MX230a12_r BP090854 231 495
17 CM035h03_r AV388702 236 776
18 CM019a12_r AV387331 236 820
19 CM020c05_r AV397497 244 840
20 CM040e11_r AV389225 312 871
21 CL63d01_r AV396543 739 1237
22 CL02e06_r AV397631 761 1279
23 CM067h03_r AV390919 1041 1280




Chlamydomonas reinhardtii
Kazusa DNA Research Institute