KCC000055A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000055A_C02 KCC000055A_c02
agtgccttcgcgggttggcggaaggtcaggcgcaattggcactatatagtttaccgtcgt
ttacagttccccgttcctgaGGCGACTCTTTCCAATGCTATAACAAATACTTACTACATT
CAAGTAGCACATCAACGTCAGGCACGCTCGTCTCGTTCCGTTCAGAGCCTTTGCAAAATT
TGCTGAACTTTCTTCAAAGCTGGCCGGCCCCACCCAACCAAACGGTTCCTATTTAGCTCG
TCACTTTCGTTCATCGGTCGCAGCAGAGGACATCACAAAGCTTCAGAGATACGTGTCGGG
TCTTTCCGGCCCCGCTGCGGGCGGCCTGCACGATGCGGAGCACCTGGACCACTACCGACG
GCGGGACAAAGCCACGGAGCGCTGGAGTGTGGCTGTGTCTCTCGTTACTGGTGGCCGGGA
CCGCAGCGGAGGTATACCCCCTGCGGCGGGTGCTGAGTTTGCTGGATTCCAGCGAACCAG
CTACCCCCACAACCCAATCACCCGGGGGCCAAGCCATTCCGGAGGGCCTCTTGTCACCCC
TCAAGGAGGAGCTCCCGGCACCACTACTCCTGCCGCCCCTGTGGACGCCCTCCGATTTCG
GTTTAGTTGCTCCGGGCTCCCGAAGTAGCCAGAGGGCATTGATGTTCCACAATGGCGAGG
AGGAATATGACCCCGACCCAGATCCTACGCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000055A_C02 KCC000055A_c02
         (692 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_918975.1| putative glycoprotein [Burkholderia cepacia pha...    40  0.034
ref|XP_294567.2| similar to bA113O24.1 (similar to insulin-like ...    38  0.17
ref|NP_889268.1| putative exported protein [Bordetella bronchise...    37  0.22
dbj|BAC32175.1| unnamed protein product [Mus musculus]                 37  0.22
dbj|BAB62550.1| OSJNBa0089K24.5 [Oryza sativa (japonica cultivar...    37  0.37

>ref|NP_918975.1| putative glycoprotein [Burkholderia cepacia phage BcepNazgul]
           gi|34304525|gb|AAQ63342.1| putative glycoprotein
           [Burkholderia cepacia phage BcepNazgul]
          Length = 1270

 Score = 40.0 bits (92), Expect = 0.034
 Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 9/91 (9%)
 Frame = +2

Query: 320 GGLHDAEHLDHYRRRDKATERWSVAVSLVTGGRDRSGGIPPAAGA---------EFAGFQ 472
           GG+ DA +  +   R +AT  W+V  + V  G   +GG+ P  GA         E A + 
Sbjct: 208 GGIPDAPNNANQYTRGQAT--WNVLGAFVASGASHAGGLVPDPGATAGATKYLREDAQWA 265

Query: 473 RTSYPHNPITRGPSHSGGPLVTPQGGAPGTT 565
              YP   +  G SH+ G LV   G   GTT
Sbjct: 266 VPPYPSTMVGSGASHAAG-LVPDPGATAGTT 295

>ref|XP_294567.2| similar to bA113O24.1 (similar to insulin-like growth factor
           binding protein) [Homo sapiens]
           gi|17384405|emb|CAD13245.1| bA113O24.1 (similar to
           insulin-like growth factor binding protein) [Homo
           sapiens]
          Length = 278

 Score = 37.7 bits (86), Expect = 0.17
 Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 295 VGSFRPRCG--RPARCGAPGPLPTAGQSHGALECGCVSR 405
           VG  RP+CG  RP  C AP P P  G S    ECGC +R
Sbjct: 31  VGGRRPKCGPCRPEGCPAPAPCPAPGIS-ALDECGCCAR 68

>ref|NP_889268.1| putative exported protein [Bordetella bronchiseptica]
           gi|33576145|emb|CAE33224.1| putative exported protein
           [Bordetella bronchiseptica]
          Length = 336

 Score = 37.4 bits (85), Expect = 0.22
 Identities = 27/70 (38%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
 Frame = +2

Query: 281 LQRYVSGLSGPAAGGLHDA-----EHLDHYRRRDKATERWSVAVSLVTGGRDRSGGIPPA 445
           LQR   G++GP    L DA       LDH R RDK        + L+T G D +  +PPA
Sbjct: 165 LQRTAVGMAGPNTA-LGDAIGLGIRMLDHARERDKI-------LILLTDGNDTASAVPPA 216

Query: 446 AGAEFAGFQR 475
             AE A   R
Sbjct: 217 RAAELAAQHR 226

>dbj|BAC32175.1| unnamed protein product [Mus musculus]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.22
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = -2

Query: 598 KSEGVHRGGRSSGAGSSSLRGDKRPS--GMAWPPGDWVVGVAGSLESSKLSTRRRGYTSA 425
           +S  +HRG RSS AGS +++G  RPS  G++    +  +GV+  +  S L   R      
Sbjct: 34  RSGCLHRGCRSSAAGSPAVQGHARPSVRGLSHQEHEAAIGVSSPVWESVLLGVREVVELR 93

Query: 424 AVPATSNERHSHTPALRGFVPPSVVVQVLRIVQAARSGAG 305
           A P  +       P LR       ++    + +A  +G+G
Sbjct: 94  AEPEAAGRAAMGAPGLRAATAALGLLLCAGLGRAGPAGSG 133

>dbj|BAB62550.1| OSJNBa0089K24.5 [Oryza sativa (japonica cultivar-group)]
          Length = 1053

 Score = 36.6 bits (83), Expect = 0.37
 Identities = 39/142 (27%), Positives = 57/142 (39%)
 Frame = +2

Query: 155 VPFRAFAKFAELSSKLAGPTQPNGSYLARHFRSSVAAEDITKLQRYVSGLSGPAAGGLHD 334
           +PF+  +   +++S +A PT P+G+Y  R   +  +  ++  ++     L     GG  D
Sbjct: 466 IPFKNLS--IKVASGMAIPTDPSGTYHCRPIPAGYSKVEVELVEGAYEDLELDYPGG--D 521

Query: 335 AEHLDHYRRRDKATERWSVAVSLVTGGRDRSGGIPPAAGAEFAGFQRTSYPHNPITRGPS 514
            E   H R    A   W     ++ G +  S    P A          S PH P    P 
Sbjct: 522 GE--THLRDTCHAIILWRRRYIILPGRQAASRAPSPPAPPSPPQDPAPSPPHAPPAPSPP 579

Query: 515 HSGGPLVTPQGGAPGTTTPAAP 580
            S  P  TPQ  AP  T P AP
Sbjct: 580 QS--PASTPQDPAP--TPPRAP 597



EST assemble image


clone accession position
1 CL02e05_r AV397595 1 516
2 LCL046f09_r AV628759 103 476
3 LCL037h03_r AV628178 194 646
4 LCL066f04_r AV629815 194 660
5 LCL052g10_r AV629135 194 645
6 CL73d07_r AV396988 200 574
7 MXL095a07_r BP098538 206 689
8 HCL100a02_r AV645232 209 660
9 CL05a01_r AV393561 220 718
10 CL47e10_r AV395697 221 747
11 HCL091f12_r AV644647 227 646
12 HCL024c09_r AV640894 229 645
13 MXL033e02_r BP094964 238 615
14 HCL003e06_r AV639711 245 462
15 CL15e06_r AV393975 249 747
16 CL78h12_r AV397214 315 795




Chlamydomonas reinhardtii
Kazusa DNA Research Institute