Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000041A_C03 KCC000041A_c03
(640 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC86461.1| putative 40S ribosomal protein S30 [Polytomella ... 71 1e-11
ref|NP_194668.1| 40S ribosomal protein S30 (RPS30B) [Arabidopsis... 71 2e-11
pir||F84580 40S ribosomal protein S30 [imported] - Arabidopsis t... 71 2e-11
sp|Q05472|RS30_HUMAN 40S ribosomal protein S30 gi|1334234|emb|CA... 67 2e-10
ref|XP_345683.1| similar to fusion protein [Rattus norvegicus] 67 2e-10
>emb|CAC86461.1| putative 40S ribosomal protein S30 [Polytomella sp. Pringsheim
198.80]
Length = 61
Score = 71.2 bits (173), Expect = 1e-11
Identities = 33/42 (78%), Positives = 37/42 (87%)
Frame = +3
Query: 66 PRVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKRGPNSN 191
P+V KQEKKKRP GRA+KR+KY RRFVNVV G GKK+GPNSN
Sbjct: 19 PKVAKQEKKKRPVGRALKRVKYIRRFVNVVSGIGKKKGPNSN 60
Score = 37.0 bits (84), Expect = 0.24
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = +2
Query: 26 GSLARAGKVRGQTPKGPQAGEEEAPAG 106
GSLARAGKVRGQTPK + +++ P G
Sbjct: 6 GSLARAGKVRGQTPKVAKQEKKKRPVG 32
>ref|NP_194668.1| 40S ribosomal protein S30 (RPS30B) [Arabidopsis thaliana]
gi|15241895|ref|NP_200478.1| 40S ribosomal protein S30
(RPS30C) [Arabidopsis thaliana]
gi|18399137|ref|NP_565458.1| 40S ribosomal protein S30
(RPS30A) [Arabidopsis thaliana]
gi|22096379|sp|P49689|RS30_ARATH 40S ribosomal protein
S30 gi|25407611|pir||H85342 RIBOSOMAL PROTEIN S30
homolog [imported] - Arabidopsis thaliana
gi|7269837|emb|CAB79697.1| RIBOSOMAL PROTEIN S30 homolog
[Arabidopsis thaliana] gi|10176771|dbj|BAB09885.1| 40S
ribosomal protein S30 homolog [Arabidopsis thaliana]
gi|15450480|gb|AAK96533.1| At2g19750/F6F22.22
[Arabidopsis thaliana] gi|16974467|gb|AAL31237.1|
At2g19750/F6F22.22 [Arabidopsis thaliana]
gi|20197294|gb|AAC62141.2| 40S ribosomal protein S30
[Arabidopsis thaliana] gi|21618031|gb|AAM67081.1| 40S
ribosomal protein S30 [Arabidopsis thaliana]
gi|22135964|gb|AAM91564.1| 40S ribosomal protein
S30-like protein [Arabidopsis thaliana]
gi|30102786|gb|AAP21311.1| At5g56670 [Arabidopsis
thaliana]
Length = 62
Score = 70.9 bits (172), Expect = 2e-11
Identities = 31/42 (73%), Positives = 38/42 (89%)
Frame = +3
Query: 66 PRVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKRGPNSN 191
P+V KQ+KKK+PRGRA KR+++NRRFV VVGFGKKRGPNS+
Sbjct: 19 PKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
Score = 39.7 bits (91), Expect = 0.037
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 26 GSLARAGKVRGQTPKGPQAGEEEAPAGPCHE 118
GSLARAGKVRGQTPK + +++ P G H+
Sbjct: 6 GSLARAGKVRGQTPKVAKQDKKKKPRGRAHK 36
>pir||F84580 40S ribosomal protein S30 [imported] - Arabidopsis thaliana
Length = 68
Score = 70.9 bits (172), Expect = 2e-11
Identities = 31/42 (73%), Positives = 38/42 (89%)
Frame = +3
Query: 66 PRVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKRGPNSN 191
P+V KQ+KKK+PRGRA KR+++NRRFV VVGFGKKRGPNS+
Sbjct: 25 PKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 66
Score = 39.7 bits (91), Expect = 0.037
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 26 GSLARAGKVRGQTPKGPQAGEEEAPAGPCHE 118
GSLARAGKVRGQTPK + +++ P G H+
Sbjct: 12 GSLARAGKVRGQTPKVAKQDKKKKPRGRAHK 42
>sp|Q05472|RS30_HUMAN 40S ribosomal protein S30 gi|1334234|emb|CAA44546.1| ribosomal
protein S30 [Rattus rattus]
Length = 59
Score = 67.0 bits (162), Expect = 2e-10
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +3
Query: 66 PRVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKRGPNSN 191
P+V KQEKKK+ GRA +RM+YNRRFVNVV FGKK+GPN+N
Sbjct: 17 PKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
Score = 33.9 bits (76), Expect = 2.1
Identities = 16/27 (59%), Positives = 20/27 (73%)
Frame = +2
Query: 26 GSLARAGKVRGQTPKGPQAGEEEAPAG 106
GSLARAGKVRGQTPK + +++ G
Sbjct: 4 GSLARAGKVRGQTPKVAKQEKKKKKTG 30
>ref|XP_345683.1| similar to fusion protein [Rattus norvegicus]
Length = 151
Score = 67.0 bits (162), Expect = 2e-10
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +3
Query: 66 PRVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKRGPNSN 191
P+V KQEKKK+ GRA +RM+YNRRFVNVV FGKK+GPN+N
Sbjct: 109 PKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 150
Score = 33.9 bits (76), Expect = 2.1
Identities = 16/27 (59%), Positives = 20/27 (73%)
Frame = +2
Query: 26 GSLARAGKVRGQTPKGPQAGEEEAPAG 106
GSLARAGKVRGQTPK + +++ G
Sbjct: 96 GSLARAGKVRGQTPKVAKQEKKKKKTG 122