Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000038A_C01 KCC000038A_c01
(1041 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181715.1| 40S ribosomal protein S2 (RPS2C) [Arabidopsis t... 190 1e-47
gb|AAM62944.1| 40S ribosomal protein S2 [Arabidopsis thaliana] 187 9e-47
gb|AAM67061.1| ribosomal protein S2, putative [Arabidopsis thali... 182 4e-45
ref|NP_176134.1| 40S ribosomal protein S2 (RPS2A) [Arabidopsis t... 182 4e-45
ref|NP_564737.1| 40S ribosomal protein, putative [Arabidopsis th... 182 4e-45
>ref|NP_181715.1| 40S ribosomal protein S2 (RPS2C) [Arabidopsis thaliana]
gi|3915847|sp|P49688|RS2_ARATH 40S ribosomal protein S2
gi|25294522|pir||G84846 40S ribosomal protein S2
[imported] - Arabidopsis thaliana
gi|2335095|gb|AAC02764.1| 40S ribosomal protein S2
[Arabidopsis thaliana] gi|15081715|gb|AAK82512.1|
At2g41840/T11A7.6 [Arabidopsis thaliana]
gi|22137092|gb|AAM91391.1| At2g41840/T11A7.6
[Arabidopsis thaliana]
Length = 285
Score = 190 bits (483), Expect(2) = 1e-47
Identities = 111/247 (44%), Positives = 144/247 (57%), Gaps = 2/247 (0%)
Frame = +3
Query: 114 GRVPGVLAAARWQEVSDEEKWVPCTKLGRLVQQGQD*VAGARSTCSPCPSRSTRLLSTSW 293
GR G R S+EEKWVP TKLGRLV G + P + +++
Sbjct: 34 GRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIKQI-EQIYLHSLPVKEYQIIDMLI 92
Query: 294 ARL*RTR**RSWPVQKQTRAGQRTRLQGLRAWLVTSTATSAWASSAPRRLPPPSAVPSS- 470
+ + PVQKQTRAGQRTR +A++V +A+ +
Sbjct: 93 GPTLKDEVMKIMPVQKQTRAGQRTRF---KAFVVVGDGNGHVGLGVKCSKEVATAIRGAI 149
Query: 471 -RPRCPSCPSAAATGVTRSCKVHTVPTKVTGKCGSVTIRLTPAPRGAGIVAARTPKKVLQ 647
+ P + K HTVP KVTGKCGSVT+R+ PAPRG+GIVAAR PKKVLQ
Sbjct: 150 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 209
Query: 648 MAGIEDCYTCSRGSTKTLGNFVRATFNALSRTYGFLTPELWRESKYTKAPFQEFTDFLAK 827
AGI+D +T SRGSTKTLGNFV+ATF+ L +TYGFLTPE W+E++++++P+QE TDFLA
Sbjct: 210 FAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLAS 269
Query: 828 PHIGESK 848
+ SK
Sbjct: 270 KALSTSK 276
Score = 125 bits (315), Expect = 9e-28
Identities = 64/105 (60%), Positives = 76/105 (71%)
Frame = +2
Query: 209 AGARLSRWSEIYLFSMPVKEYQIVEYFLGSALKDEVMKIMARAEADPRRPAHPASRPSCV 388
A + + +IYL S+PVKEYQI++ +G LKDEVMKIM + R + V
Sbjct: 65 AAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMP-VQKQTRAGQRTRFKAFVV 123
Query: 389 VGDFNGHIGLGVKCAKEVATAIRGAIIQAKMSVVPVRRGYWGNKI 523
VGD NGH+GLGVKC+KEVATAIRGAII AK+SVVPVRRGYWGNKI
Sbjct: 124 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 168
Score = 22.7 bits (47), Expect(2) = 1e-47
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 73 GSFGRGFGG 99
G FGRGFGG
Sbjct: 17 GDFGRGFGG 25
>gb|AAM62944.1| 40S ribosomal protein S2 [Arabidopsis thaliana]
Length = 285
Score = 187 bits (476), Expect(2) = 9e-47
Identities = 110/247 (44%), Positives = 143/247 (57%), Gaps = 2/247 (0%)
Frame = +3
Query: 114 GRVPGVLAAARWQEVSDEEKWVPCTKLGRLVQQGQD*VAGARSTCSPCPSRSTRLLSTSW 293
GR G R S+EEKWVP TKLGR V G + P + +++
Sbjct: 34 GRGRGGRGGRRGGRASEEEKWVPVTKLGRHVAAGHIKQI-EQIYLHSLPVKEYQIIDMLI 92
Query: 294 ARL*RTR**RSWPVQKQTRAGQRTRLQGLRAWLVTSTATSAWASSAPRRLPPPSAVPSS- 470
+ + PVQKQTRAGQRTR +A++V +A+ +
Sbjct: 93 GPTLKDEVMKIMPVQKQTRAGQRTRF---KAFVVVGDGNGHVGLGVKCSKEVATAIRGAI 149
Query: 471 -RPRCPSCPSAAATGVTRSCKVHTVPTKVTGKCGSVTIRLTPAPRGAGIVAARTPKKVLQ 647
+ P + K HTVP KVTGKCGSVT+R+ PAPRG+GIVAAR PKKVLQ
Sbjct: 150 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 209
Query: 648 MAGIEDCYTCSRGSTKTLGNFVRATFNALSRTYGFLTPELWRESKYTKAPFQEFTDFLAK 827
AGI+D +T SRGSTKTLGNFV+ATF+ L +TYGFLTPE W+E++++++P+QE TDFLA
Sbjct: 210 FAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLAS 269
Query: 828 PHIGESK 848
+ SK
Sbjct: 270 KALSTSK 276
Score = 125 bits (315), Expect = 9e-28
Identities = 64/105 (60%), Positives = 76/105 (71%)
Frame = +2
Query: 209 AGARLSRWSEIYLFSMPVKEYQIVEYFLGSALKDEVMKIMARAEADPRRPAHPASRPSCV 388
A + + +IYL S+PVKEYQI++ +G LKDEVMKIM + R + V
Sbjct: 65 AAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMP-VQKQTRAGQRTRFKAFVV 123
Query: 389 VGDFNGHIGLGVKCAKEVATAIRGAIIQAKMSVVPVRRGYWGNKI 523
VGD NGH+GLGVKC+KEVATAIRGAII AK+SVVPVRRGYWGNKI
Sbjct: 124 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 168
Score = 22.7 bits (47), Expect(2) = 9e-47
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 73 GSFGRGFGG 99
G FGRGFGG
Sbjct: 17 GDFGRGFGG 25
>gb|AAM67061.1| ribosomal protein S2, putative [Arabidopsis thaliana]
Length = 284
Score = 182 bits (462), Expect(2) = 4e-45
Identities = 104/237 (43%), Positives = 140/237 (58%), Gaps = 2/237 (0%)
Frame = +3
Query: 144 RWQEVSDEEKWVPCTKLGRLVQQGQD*VAGARSTCSPCPSRSTRLLSTSWARL*RTR**R 323
R S+E KWVP TKLGRLV + + P + +++ + +
Sbjct: 43 RGGRASEETKWVPVTKLGRLVADNKI-TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMK 101
Query: 324 SWPVQKQTRAGQRTRLQGLRAWLVTSTATSAWASSAPRRLPPPSAVPSS--RPRCPSCPS 497
PVQKQTRAGQRTR +A++V +A+ + + P
Sbjct: 102 IMPVQKQTRAGQRTRF---KAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 158
Query: 498 AAATGVTRSCKVHTVPTKVTGKCGSVTIRLTPAPRGAGIVAARTPKKVLQMAGIEDCYTC 677
+ K HTVP KVTGKCGSVT+R+ PAPRG+GIVAAR PKKVLQ AGI+D +T
Sbjct: 159 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Query: 678 SRGSTKTLGNFVRATFNALSRTYGFLTPELWRESKYTKAPFQEFTDFLAKPHIGESK 848
SRGSTKTLGNFV+ATF+ L +TYGFLTPE W+E++++++P+QE TDFL+ + +K
Sbjct: 219 SRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATK 275
Score = 127 bits (319), Expect = 3e-28
Identities = 64/105 (60%), Positives = 79/105 (74%)
Frame = +2
Query: 209 AGARLSRWSEIYLFSMPVKEYQIVEYFLGSALKDEVMKIMARAEADPRRPAHPASRPSCV 388
A ++++ +IYL S+PVKEYQI+++ +G LKDEVMKIM + R + V
Sbjct: 64 ADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP-VQKQTRAGQRTRFKAFVV 122
Query: 389 VGDFNGHIGLGVKCAKEVATAIRGAIIQAKMSVVPVRRGYWGNKI 523
VGD NGH+GLGVKC+KEVATAIRGAII AK+SVVPVRRGYWGNKI
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 22.7 bits (47), Expect(2) = 4e-45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 73 GSFGRGFGG 99
G FGRGFGG
Sbjct: 17 GDFGRGFGG 25
>ref|NP_176134.1| 40S ribosomal protein S2 (RPS2A) [Arabidopsis thaliana]
gi|11276533|pir||T50673 ribosomal protein S2 homolog XW6
[imported] - Arabidopsis thaliana
gi|6566272|dbj|BAA88263.1| similar to ribosomal protein
S2 [Arabidopsis thaliana]
gi|12321043|gb|AAG50639.1|AC082643_3 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|14423442|gb|AAK62403.1|AF386958_1 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|18181932|dbj|BAB83870.1| ribosomal protein S2
[Arabidopsis thaliana] gi|18377554|gb|AAL66943.1|
ribosomal protein S2, putative [Arabidopsis thaliana]
Length = 284
Score = 182 bits (462), Expect(2) = 4e-45
Identities = 104/237 (43%), Positives = 140/237 (58%), Gaps = 2/237 (0%)
Frame = +3
Query: 144 RWQEVSDEEKWVPCTKLGRLVQQGQD*VAGARSTCSPCPSRSTRLLSTSWARL*RTR**R 323
R S+E KWVP TKLGRLV + + P + +++ + +
Sbjct: 43 RGGRASEETKWVPVTKLGRLVADNKI-TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMK 101
Query: 324 SWPVQKQTRAGQRTRLQGLRAWLVTSTATSAWASSAPRRLPPPSAVPSS--RPRCPSCPS 497
PVQKQTRAGQRTR +A++V +A+ + + P
Sbjct: 102 IMPVQKQTRAGQRTRF---KAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 158
Query: 498 AAATGVTRSCKVHTVPTKVTGKCGSVTIRLTPAPRGAGIVAARTPKKVLQMAGIEDCYTC 677
+ K HTVP KVTGKCGSVT+R+ PAPRG+GIVAAR PKKVLQ AGI+D +T
Sbjct: 159 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Query: 678 SRGSTKTLGNFVRATFNALSRTYGFLTPELWRESKYTKAPFQEFTDFLAKPHIGESK 848
SRGSTKTLGNFV+ATF+ L +TYGFLTPE W+E++++++P+QE TDFL+ + +K
Sbjct: 219 SRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATK 275
Score = 127 bits (319), Expect = 3e-28
Identities = 64/105 (60%), Positives = 79/105 (74%)
Frame = +2
Query: 209 AGARLSRWSEIYLFSMPVKEYQIVEYFLGSALKDEVMKIMARAEADPRRPAHPASRPSCV 388
A ++++ +IYL S+PVKEYQI+++ +G LKDEVMKIM + R + V
Sbjct: 64 ADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP-VQKQTRAGQRTRFKAFVV 122
Query: 389 VGDFNGHIGLGVKCAKEVATAIRGAIIQAKMSVVPVRRGYWGNKI 523
VGD NGH+GLGVKC+KEVATAIRGAII AK+SVVPVRRGYWGNKI
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 22.7 bits (47), Expect(2) = 4e-45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 73 GSFGRGFGG 99
G FGRGFGG
Sbjct: 17 GDFGRGFGG 25
>ref|NP_564737.1| 40S ribosomal protein, putative [Arabidopsis thaliana]
gi|18406353|ref|NP_564740.1| 40S ribosomal protein S2
(RPS2B) [Arabidopsis thaliana]
gi|22330310|ref|NP_683443.1| 40S ribosomal protein,
putative [Arabidopsis thaliana]
gi|14475933|gb|AAK62780.1|AC027036_1 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|14475937|gb|AAK62784.1|AC027036_5 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|18086426|gb|AAL57668.1| At1g59359/T4M14_3
[Arabidopsis thaliana] gi|18146720|dbj|BAB82426.1|
ribosomal protein S2 [Arabidopsis thaliana]
gi|18265370|dbj|BAB84012.1| ribosomal protein S2
[Arabidopsis thaliana] gi|18265374|dbj|BAB84016.1|
ribosomal protein S2 [Arabidopsis thaliana]
gi|22137288|gb|AAM91489.1| At1g59359/T4M14_3
[Arabidopsis thaliana]
Length = 284
Score = 182 bits (462), Expect(2) = 4e-45
Identities = 104/237 (43%), Positives = 140/237 (58%), Gaps = 2/237 (0%)
Frame = +3
Query: 144 RWQEVSDEEKWVPCTKLGRLVQQGQD*VAGARSTCSPCPSRSTRLLSTSWARL*RTR**R 323
R S+E KWVP TKLGRLV + + P + +++ + +
Sbjct: 43 RGGRASEETKWVPVTKLGRLVADNKI-TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMK 101
Query: 324 SWPVQKQTRAGQRTRLQGLRAWLVTSTATSAWASSAPRRLPPPSAVPSS--RPRCPSCPS 497
PVQKQTRAGQRTR +A++V +A+ + + P
Sbjct: 102 IMPVQKQTRAGQRTRF---KAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 158
Query: 498 AAATGVTRSCKVHTVPTKVTGKCGSVTIRLTPAPRGAGIVAARTPKKVLQMAGIEDCYTC 677
+ K HTVP KVTGKCGSVT+R+ PAPRG+GIVAAR PKKVLQ AGI+D +T
Sbjct: 159 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Query: 678 SRGSTKTLGNFVRATFNALSRTYGFLTPELWRESKYTKAPFQEFTDFLAKPHIGESK 848
SRGSTKTLGNFV+ATF+ L +TYGFLTPE W+E++++++P+QE TDFL+ + +K
Sbjct: 219 SRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATK 275
Score = 127 bits (319), Expect = 3e-28
Identities = 64/105 (60%), Positives = 79/105 (74%)
Frame = +2
Query: 209 AGARLSRWSEIYLFSMPVKEYQIVEYFLGSALKDEVMKIMARAEADPRRPAHPASRPSCV 388
A ++++ +IYL S+PVKEYQI+++ +G LKDEVMKIM + R + V
Sbjct: 64 ADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP-VQKQTRAGQRTRFKAFVV 122
Query: 389 VGDFNGHIGLGVKCAKEVATAIRGAIIQAKMSVVPVRRGYWGNKI 523
VGD NGH+GLGVKC+KEVATAIRGAII AK+SVVPVRRGYWGNKI
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 167
Score = 22.7 bits (47), Expect(2) = 4e-45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 73 GSFGRGFGG 99
G FGRGFGG
Sbjct: 17 GDFGRGFGG 25
