Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000031A_C05 KCC000031A_c05
(1170 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P45633|RL10_MAIZE 60S RIBOSOMAL PROTEIN L10 (QM PROTEIN HOMOL... 92 2e-17
emb|CAD98460.1| ribsomal protein L10, probable [Cryptosporidium ... 67 3e-17
sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM) gi|1902894|... 89 1e-16
ref|NP_564878.1| 60S ribosomal protein L10 (RPL10C) [Arabidopsis... 87 6e-16
gb|AAK53755.1|AF367627_1 QM-like protein [Trypanosoma brucei] 67 7e-16
>sp|P45633|RL10_MAIZE 60S RIBOSOMAL PROTEIN L10 (QM PROTEIN HOMOLOG)
gi|7447294|pir||T02068 probable transcription factor QM
- maize gi|468056|gb|AAA17419.1| QM protein
Length = 220
Score = 92.0 bits (227), Expect = 2e-17
Identities = 74/199 (37%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Frame = +3
Query: 108 PTPRSAFTMRGMKRADVDTFPWLRPPGAVGEKENVTQ*GAGVLPRCWRLTSTW*RNAGKE 287
P P+ GMKR VD FP+ + E+ENV+ T ++AGK+
Sbjct: 27 PDPKIRIYDVGMKRKGVDEFPYCVHLVS-WERENVSSEALEAARIVCNKYMT--KSAGKD 83
Query: 288 AFHLARARGTHFHVAAHQQDAFVAQGADR--PADRYAWWLSASPTASGARVQIGQVLMSI 461
AFHL R R FHV + A GADR R A+ P + ARV IGQVL+S+
Sbjct: 84 AFHL-RVRVHPFHVLRINKMLSCA-GADRLQTGMRGAF---GKPQGTCARVDIGQVLLSV 138
Query: 462 RCRDNHGACGRRSALRPRQVQVPRAGRRSSGSTHWGFTNLSRKDFKIFREEGRLINDGSH 641
RC+DN+ A ALR + + P A ++ S WGFT SR D+ ++ EGR++ DG +
Sbjct: 139 RCKDNNAAHASE-ALRRAKFKFP-ARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVN 196
Query: 642 VKVITNKGPLAEREPDHIF 698
K++ N G L +R P F
Sbjct: 197 AKLLANHGRLEKRAPGKAF 215
Score = 41.2 bits (95), Expect = 0.035
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 CRGVPDPKIRIYDAGYEEGRCGHLPLAASTWRSWREGERDPVRRWS-AAPLLAANKYMVK 271
CRGVPDPKIRIYD G + P SW ER+ V + A + NKYM K
Sbjct: 23 CRGVPDPKIRIYDVGMKRKGVDEFPYCVHL-VSW---ERENVSSEALEAARIVCNKYMTK 78
Query: 272 KRRK 283
K
Sbjct: 79 SAGK 82
>emb|CAD98460.1| ribsomal protein L10, probable [Cryptosporidium parvum]
Length = 222
Score = 67.0 bits (162), Expect(2) = 3e-17
Identities = 53/140 (37%), Positives = 77/140 (54%), Gaps = 3/140 (2%)
Frame = +3
Query: 279 GKEAFHLARARGTHFHVAAHQQDAFVAQGADR--PADRYAWWLSASPTASGARVQIGQVL 452
GK+ FHL R R FHV + A GADR R A+ PT + ARV IGQVL
Sbjct: 81 GKDNFHL-RIRVHPFHVLRINKMLSCA-GADRLQTGMRGAY---GKPTGTAARVNIGQVL 135
Query: 453 MSIRCRDNHGACGRRSALRPRQVQVPRAGRRSSG-STHWGFTNLSRKDFKIFREEGRLIN 629
MSIRC+++ ALR + + P GR+ S WGFT +++++ ++ EGR++
Sbjct: 136 MSIRCKEDKTQTAVM-ALRRAKYKFP--GRQKVVVSDKWGFTKFTKEEYLKYQAEGRIVP 192
Query: 630 DGSHVKVITNKGPLAEREPD 689
DG + K I+ +G L+ P+
Sbjct: 193 DGVNCKYISCRGSLSRIFPE 212
Score = 49.7 bits (117), Expect = 1e-04
Identities = 62/173 (35%), Positives = 77/173 (43%), Gaps = 7/173 (4%)
Frame = +1
Query: 37 PPGCYRLCLRVMPYPKSRFLPWCARPQDPHLRC-GV*RGPMWTPS-PGCVHLAQLARRRT 210
P CYR C R PYPKSRF C DP +R V R + P +HL +
Sbjct: 5 PARCYRYC-RGKPYPKSRF---CRGVPDPKIRIYDVGRKKAECDAFPAVIHLISDEYEQI 60
Query: 211 *PSEALECCPAAGG*QVHGEETPERRRSTWRVRVAPTSTWLRINKMLSWRRALIALQTGM 390
SEALE + + + + R+RV P LRINKMLS A LQTGM
Sbjct: 61 -SSEALEAARISA--NKYMIKFCGKDNFHLRIRVHPFHV-LRINKMLSCAGA-DRLQTGM 115
Query: 391 RGGFRQ-----AQRRLALVCRSARC**ASAAVTTTVPVAAGVPCGRAKFKFPG 534
RG + + A+ + V S RC T T +A RAK+KFPG
Sbjct: 116 RGAYGKPTGTAARVNIGQVLMSIRC---KEDKTQTAVMA----LRRAKYKFPG 161
Score = 44.7 bits (104), Expect(2) = 3e-17
Identities = 26/59 (44%), Positives = 32/59 (54%)
Frame = +2
Query: 95 CRGVPDPKIRIYDAGYEEGRCGHLPLAASTWRSWREGERDPVRRWSAAPLLAANKYMVK 271
CRGVPDPKIRIYD G ++ C P E E+ AA ++ANKYM+K
Sbjct: 23 CRGVPDPKIRIYDVGRKKAECDAFPAVIHLISD--EYEQISSEALEAA-RISANKYMIK 78
>sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM) gi|1902894|dbj|BAA19462.1| QM
family protein [Solanum melongena]
Length = 219
Score = 89.4 bits (220), Expect = 1e-16
Identities = 77/203 (37%), Positives = 102/203 (49%), Gaps = 6/203 (2%)
Frame = +3
Query: 108 PTPRSAFTMRGMKRADVDTFPWLRPPGAVGEKENVTQ*GAGVLPRCWRLTSTW*RNAGKE 287
P P+ GMKR VD FP+ + EKENV+ T ++AGK+
Sbjct: 27 PDPKIRIYDVGMKRKGVDEFPFCVHLVS-WEKENVSSEALEAARIACNKYMT--KSAGKD 83
Query: 288 AFHLARARGTHFHVAAHQQDAFVAQGADR--PADRYAWWLSASPTASGARVQIGQVLMSI 461
AFHL R R FHV + A GADR R A+ P ARV IGQVL+S+
Sbjct: 84 AFHL-RVRVHPFHVLRINKMLSCA-GADRLQTGMRGAF---GKPQGVCARVAIGQVLLSV 138
Query: 462 RCRD---NHGACGRRSALRPRQVQVPRAGRRSS-GSTHWGFTNLSRKDFKIFREEGRLIN 629
RC+D NH + ALR + + P GR+ S WGFT SR D+ ++ E R++
Sbjct: 139 RCKDGNSNHA----QEALRRAKFKFP--GRQKIIVSRKWGFTKFSRTDYLKYKSENRIVP 192
Query: 630 DGSHVKVITNKGPLAEREPDHIF 698
DG + K++ N GPLA R+P F
Sbjct: 193 DGVNAKLLGNHGPLAARQPGRAF 215
Score = 55.5 bits (132), Expect = 2e-06
Identities = 66/174 (37%), Positives = 81/174 (45%), Gaps = 8/174 (4%)
Frame = +1
Query: 37 PPGCYRLCLRVMPYPKSRFLPWCARPQDPHLR---CGV*RGPMWTPSPGCVHLAQLARRR 207
P CYR ++ PYPKSRF C DP +R G+ R + P CVHL +
Sbjct: 5 PARCYRQ-IKNKPYPKSRF---CRGVPDPKIRIYDVGMKRKGV-DEFPFCVHLVSWEKEN 59
Query: 208 T*PSEALECCPAAGG*QVHGEETPERRRSTWRVRVAPTSTWLRINKMLSWRRALIALQTG 387
SEALE A + ++ + RVRV P LRINKMLS A LQTG
Sbjct: 60 V-SSEALEAARIAC--NKYMTKSAGKDAFHLRVRVHPFHV-LRINKMLSCAGA-DRLQTG 114
Query: 388 MRGGFRQAQ---RRLAL--VCRSARC**ASAAVTTTVPVAAGVPCGRAKFKFPG 534
MRG F + Q R+A+ V S RC ++ A RAKFKFPG
Sbjct: 115 MRGAFGKPQGVCARVAIGQVLLSVRCKDGNSN-------HAQEALRRAKFKFPG 161
Score = 42.0 bits (97), Expect = 0.021
Identities = 27/64 (42%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 CRGVPDPKIRIYDAGYEEGRCGHLPLAASTWRSWREGERDPVRRWS-AAPLLAANKYMVK 271
CRGVPDPKIRIYD G + P SW E++ V + A +A NKYM K
Sbjct: 23 CRGVPDPKIRIYDVGMKRKGVDEFPFCVHL-VSW---EKENVSSEALEAARIACNKYMTK 78
Query: 272 KRRK 283
K
Sbjct: 79 SAGK 82
>ref|NP_564878.1| 60S ribosomal protein L10 (RPL10C) [Arabidopsis thaliana]
gi|14194141|gb|AAK56265.1|AF367276_1 At1g66580/T12I7_3
[Arabidopsis thaliana] gi|15777885|gb|AAL05903.1|
At1g66580/T12I7_3 [Arabidopsis thaliana]
gi|21593025|gb|AAM64974.1| 60S ribosomal protein L10,
putative [Arabidopsis thaliana]
Length = 221
Score = 87.0 bits (214), Expect = 6e-16
Identities = 75/200 (37%), Positives = 99/200 (49%), Gaps = 3/200 (1%)
Frame = +3
Query: 108 PTPRSAFTMRGMKRADVDTFPWLRPPGAVGEKENVTQ*GAGVLPRCWRLTSTW*RNAGKE 287
P P+ GMKR VD FP+ + EKENV+ ++AGK+
Sbjct: 27 PDPKIRIYDVGMKRKGVDEFPFCVHLVS-WEKENVSSEALEAARIACNKYMV--KSAGKD 83
Query: 288 AFHLARARGTHFHVAAHQQDAFVAQGADRPADRYAWWLSASPTASG--ARVQIGQVLMSI 461
AFHL R R FHV + A GADR A A G ARV IGQVL+S+
Sbjct: 84 AFHL-RIRVHPFHVLRINKMLSCA-GADR---LQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 462 RCRDNHGACGRRSALRPRQVQVPRAGRRSS-GSTHWGFTNLSRKDFKIFREEGRLINDGS 638
RC+DNHG + ALR + + P GR+ S WGFT +R ++ R R++ DG
Sbjct: 139 RCKDNHGVHAQE-ALRRAKFKFP--GRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGV 195
Query: 639 HVKVITNKGPLAEREPDHIF 698
+ K ++N GPLA R+P F
Sbjct: 196 NAKFLSNHGPLANRQPGSAF 215
Score = 43.5 bits (101), Expect = 0.007
Identities = 28/64 (43%), Positives = 33/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 CRGVPDPKIRIYDAGYEEGRCGHLPLAASTWRSWREGERDPVRRWS-AAPLLAANKYMVK 271
CRGVPDPKIRIYD G + P SW E++ V + A +A NKYMVK
Sbjct: 23 CRGVPDPKIRIYDVGMKRKGVDEFPFCVHL-VSW---EKENVSSEALEAARIACNKYMVK 78
Query: 272 KRRK 283
K
Sbjct: 79 SAGK 82
>gb|AAK53755.1|AF367627_1 QM-like protein [Trypanosoma brucei]
Length = 213
Score = 67.0 bits (162), Expect(2) = 7e-16
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Frame = +3
Query: 270 RNAGKEAFHLARARGTHFHVAAHQQDAFVAQGADR--PADRYAWWLSASPTASGARVQIG 443
+ A KE FH+ R R FHV + A GADR R ++ P + ARV+IG
Sbjct: 78 KRANKECFHM-RIRAHPFHVLRINKMLSCA-GADRLQTGMRQSY---GKPNGTCARVRIG 132
Query: 444 QVLMSIRCRDNHGACGRRSALRPRQVQVPRAGRRSSG-STHWGFTNLSRKDFKIFREEGR 620
Q+L+S+R +D + S LR +++ P GR+ S +WGFTN+ R +++ R+ G+
Sbjct: 133 QILLSMRTKDTYVPQALES-LRRAKMKFP--GRQIIVISKYWGFTNILRNEYEELRDAGK 189
Query: 621 LINDGSHVKVITNKGPL 671
L G HVK+IT KG +
Sbjct: 190 LQQRGLHVKLITPKGKI 206
Score = 51.6 bits (122), Expect = 3e-05
Identities = 61/173 (35%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Frame = +1
Query: 37 PPGCYRLCLRVMPYPKSRFLPWCARPQDPHLR---CGV*RGPMWTPSPGCVHLAQLARRR 207
P CYR C + PYPKSRF C DP +R G R P+ P CVH+ +
Sbjct: 5 PARCYRFC-KNKPYPKSRF---CRGVPDPRIRTFDIGKRRAPV-DEFPVCVHVVSRELEQ 59
Query: 208 T*PSEALECCPAAGG*QVHGEETPERRRST----WRVRVAPTSTWLRINKMLSWRRALIA 375
SEALE ++ + +R + R+R P LRINKMLS A
Sbjct: 60 I-SSEALEAA------RIQANKYMVKRANKECFHMRIRAHPFHV-LRINKMLSCAGA-DR 110
Query: 376 LQTGMRGGFRQAQRRLALVCRSARC**ASAAVTTTVPVAAGVPCGRAKFKFPG 534
LQTGMR + + A V R + + T VP A RAK KFPG
Sbjct: 111 LQTGMRQSYGKPNGTCARV-RIGQILLSMRTKDTYVPQAL-ESLRRAKMKFPG 161
Score = 40.0 bits (92), Expect(2) = 7e-16
Identities = 25/63 (39%), Positives = 31/63 (48%)
Frame = +2
Query: 95 CRGVPDPKIRIYDAGYEEGRCGHLPLAASTWRSWREGERDPVRRWSAAPLLAANKYMVKK 274
CRGVPDP+IR +D G P+ RE E+ AA + ANKYMVK+
Sbjct: 23 CRGVPDPRIRTFDIGKRRAPVDEFPVCVHVVS--RELEQISSEALEAA-RIQANKYMVKR 79
Query: 275 RRK 283
K
Sbjct: 80 ANK 82