Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000015A_C05 KCC000015A_c05
(1833 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA78600.1| 60S ribosomal protein L4 [Chlamydomonas sp. HS-5] 446 e-138
dbj|BAC83047.1| putative 60S ribosomal protein L4/L1 [Oryza sati... 319 e-103
sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|... 366 e-100
gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thal... 358 2e-97
ref|NP_187574.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsi... 357 3e-97
>dbj|BAA78600.1| 60S ribosomal protein L4 [Chlamydomonas sp. HS-5]
Length = 363
Score = 446 bits (1147), Expect(2) = e-138
Identities = 219/297 (73%), Positives = 246/297 (82%)
Frame = +2
Query: 353 TKVWRRWHRKINVNQKRYAVVSALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKT 532
TK WRRWHRK+N+ QKR+AV SALAASALP+LVMARGH+IEQVP VPLVL DAVE V KT
Sbjct: 62 TKTWRRWHRKVNLTQKRHAVASALAASALPSLVMARGHRIEQVPEVPLVLSDAVESVSKT 121
Query: 533 SKALEILKKIGALPDVEKSKDSKSLRAGKGKMRNRRYVMRKGPLVVFANDEGISKAFRNL 712
SKALEILKKIGA PDVEK+K SK LR GKGKMRNRRY +RKGPL+VFAND GIS+AFRNL
Sbjct: 122 SKALEILKKIGAAPDVEKAKASKQLRRGKGKMRNRRYTLRKGPLIVFANDSGISRAFRNL 181
Query: 713 PGVEVTSVDRLNLLQLAPGGHLGRFCIWSKSAFEKLDKVFGTDTTESEQKKGYKLPRACM 892
GVEVTSVD LNLLQLAPGGH+GRFC+W+KSAF+KLD +FGT T SE KKGYKLPRACM
Sbjct: 182 TGVEVTSVDHLNLLQLAPGGHMGRFCVWTKSAFDKLDSIFGTYTKPSEVKKGYKLPRACM 241
Query: 893 ANGDLARLINSDEIQSAVRPAKSAGPKHAPLKKNPLRNLGAMLKLNPYAKVARRVEITRS 1072
N DL RLINSDEIQS VRPAK KHAPLKKNPL+NLGAMLKLNPYAK R E+ S
Sbjct: 242 TNSDLTRLINSDEIQSVVRPAKKLTTKHAPLKKNPLKNLGAMLKLNPYAKAQLRREVLVS 301
Query: 1073 TKKAAKRSEKLAKIAKGEKTGGQKDKAIKAIGKKFYKNMLVESDYAGDDYDLFARWI 1243
K+A R EKLA + G+ G +K KA+GKKFYK M+V+SDY G+DYD F++W+
Sbjct: 302 EKRAVARQEKLAAMRAGKSVGPKKSAEQKALGKKFYKQMIVDSDYKGEDYDEFSKWL 358
Score = 70.9 bits (172), Expect(2) = e-138
Identities = 36/45 (80%), Positives = 37/45 (82%)
Frame = +1
Query: 217 ETAAESWGTGRAVSRIPRVPVWLVPTSAGQGAFGNMCRGGRMFAP 351
+TAAESWGTGRAVSRIPRVP AGQ AFGNMCRGGRMFAP
Sbjct: 18 QTAAESWGTGRAVSRIPRVPGG-GTHRAGQAAFGNMCRGGRMFAP 61
>dbj|BAC83047.1| putative 60S ribosomal protein L4/L1 [Oryza sativa (japonica
cultivar-group)]
Length = 405
Score = 319 bits (817), Expect(2) = e-103
Identities = 160/300 (53%), Positives = 220/300 (73%), Gaps = 1/300 (0%)
Frame = +2
Query: 353 TKVWRRWHRKINVNQKRYAVVSALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKT 532
TK WR+WHR++NV+ +R AV SALAA+++P+LV+ARGH+IE VP +PLV+ D+ E ++KT
Sbjct: 109 TKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKT 168
Query: 533 SKALEILKKIGALPDVEKSKDSKSLRAGKGKMRNRRYVMRKGPLVVFAND-EGISKAFRN 709
S+A++ILK++GA D EK+KDS +R GKGKMRNRRY+ RKGPL+V+ + I KAFRN
Sbjct: 169 SQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRN 228
Query: 710 LPGVEVTSVDRLNLLQLAPGGHLGRFCIWSKSAFEKLDKVFGTDTTESEQKKGYKLPRAC 889
LPGV+V +V+RLNLL LAPGGHLGRF IW++SAF+KL++V+GT S +KKG+ LPR
Sbjct: 229 LPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPK 288
Query: 890 MANGDLARLINSDEIQSAVRPAKSAGPKHAPLKKNPLRNLGAMLKLNPYAKVARRVEITR 1069
MAN DL R+INSDE+QS V+P K +KNPL+N+ A+LKLNPY AR++
Sbjct: 289 MANADLGRIINSDEVQSVVKPLNKE-VKRREKRKNPLKNVAAVLKLNPYFGTARKMATLA 347
Query: 1070 STKKAAKRSEKLAKIAKGEKTGGQKDKAIKAIGKKFYKNMLVESDYAGDDYDLFARWITV 1249
+ R EKL +K K ++ +KA GK +YK M+ +SDYA ++D F++W+ V
Sbjct: 348 EAARIKARKEKLD--SKRTKLSPEEAAKVKAAGKAWYKTMISDSDYA--EFDNFSKWLGV 403
Score = 82.4 bits (202), Expect(2) = e-103
Identities = 48/79 (60%), Positives = 54/79 (67%), Gaps = 1/79 (1%)
Frame = +1
Query: 118 APIRPDIVRS-HPHATWRRTTRQAVRRCS*RPATETAAESWGTGRAVSRIPRVPVWLVPT 294
AP+RPD+VR H + + AV R R +T+AESWGTGRAVSRIPRVP
Sbjct: 34 APLRPDVVRFVHRLLSCNKRQPYAVSR---RAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 295 SAGQGAFGNMCRGGRMFAP 351
AGQGAFGNMCRGGRMFAP
Sbjct: 91 -AGQGAFGNMCRGGRMFAP 108
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|AAD32206.1|AF134732_1 60S
ribosomal protein L1 [Prunus armeniaca]
Length = 408
Score = 366 bits (939), Expect = e-100
Identities = 205/415 (49%), Positives = 272/415 (65%), Gaps = 4/415 (0%)
Frame = +2
Query: 23 AKMAAAIPMVEVHSIE---TGEKAAQVALPGRLHRRPSARISCAAIHTQHGEEQRARPYA 193
A AAA P+V V S+E ++ VALP + + S R + + +PYA
Sbjct: 3 AAAAAARPLVTVQSLEGDMATDQTQTVALPDVM--KASIRPDIVTFVHSNISKNSRQPYA 60
Query: 194 AVHEGRPPRPLPSLGALVAPCRVFPVCPCGWYPPAPARVPSATCAAVVACSPHTKVWRRW 373
+ S G A R+ P P G A C +P TK+WRRW
Sbjct: 61 VSKKAGHQTSAESWGTGRAVSRI-PRVPGGGTHRAGQGAFGNMCRGGRMFAP-TKIWRRW 118
Query: 374 HRKINVNQKRYAVVSALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKTSKALEIL 553
HRKINVNQKRYAVVSA+AASA+P+LV+ARGHKIE VP +PLV+ D++EGV++TS AL++L
Sbjct: 119 HRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVL 178
Query: 554 KKIGALPDVEKSKDSKSLRAGKGKMRNRRYVMRKGPLVVFANDEG-ISKAFRNLPGVEVT 730
K+IGA D EK+KDS S+R GKGKMRNRRY+ RKGPL+V+ + + KAFRN+PG+++
Sbjct: 179 KQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDII 238
Query: 731 SVDRLNLLQLAPGGHLGRFCIWSKSAFEKLDKVFGTDTTESEQKKGYKLPRACMANGDLA 910
+V+RLNLL+LAPGGHLGRF +W+KSAFEKLD ++G+ SE+K GY LPR+ M N DLA
Sbjct: 239 NVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLA 298
Query: 911 RLINSDEIQSAVRPAKSAGPKHAPLKKNPLRNLGAMLKLNPYAKVARRVEITRSTKKAAK 1090
R+INSDE+QS V P + G K APLKKNPLR L MLKLNPYAK ARR+ + ++
Sbjct: 299 RIINSDEVQSVVSPIQE-GSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKA 357
Query: 1091 RSEKLAKIAKGEKTGGQKDKAIKAIGKKFYKNMLVESDYAGDDYDLFARWITVQK 1255
+ EKL K K + ++ IKA GK +Y+ M+ +SDY ++D F +W+ V +
Sbjct: 358 KKEKLDK--KRKPISKEEASTIKAAGKAWYQTMISDSDYT--EFDNFTKWLGVSQ 408
>gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana]
Length = 406
Score = 358 bits (918), Expect = 2e-97
Identities = 203/408 (49%), Positives = 268/408 (64%), Gaps = 4/408 (0%)
Frame = +2
Query: 32 AAAIPMVEVHSIE---TGEKAAQVALPGRLHRRPSARISCAAIHTQHGEEQRARPYAAVH 202
AAA P+V + +++ + ++++ V LP + P +H Q R +PYA
Sbjct: 4 AAARPLVTIQTLDGDISTDQSSTVVLPDVM-TAPVRPDIVNFVHAQISNNSR-QPYAVSK 61
Query: 203 EGRPPRPLPSLGALVAPCRVFPVCPCGWYPPAPARVPSATCAAVVACSPHTKVWRRWHRK 382
+ S G A R+ P P G A C +P TK+WRRWHR+
Sbjct: 62 KAGHQTSAESCGTGRAVSRI-PRVPGGGTHRAGQAAFGNMCRGGRMFAP-TKIWRRWHRR 119
Query: 383 INVNQKRYAVVSALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKTSKALEILKKI 562
+NVN KR+A+VSA+AA+A+PALVMARGHKIE VP +PLV+ D+ E V+KTS A+++LK+I
Sbjct: 120 VNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQI 179
Query: 563 GALPDVEKSKDSKSLRAGKGKMRNRRYVMRKGPLVVFAND-EGISKAFRNLPGVEVTSVD 739
GA D EK+K+S +R GKGKMRNRRY+ RKGPLVV+ + I KAFRNLPGVE+ V+
Sbjct: 180 GAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVE 239
Query: 740 RLNLLQLAPGGHLGRFCIWSKSAFEKLDKVFGTDTTESEQKKGYKLPRACMANGDLARLI 919
RLNLL+LAPGGHLGRF IW+KSAFEKL+ ++G+ SE+KKGY LPRA M N DLAR+I
Sbjct: 240 RLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARII 299
Query: 920 NSDEIQSAVRPAKSAGPKHAPLKKNPLRNLGAMLKLNPYAKVARRVEITRSTKKAAKRSE 1099
NSDEIQS V P K K A LKKNPL+NL MLKLNPYAK A+R+ + ++ + E
Sbjct: 300 NSDEIQSVVNPIKK-DAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKE 358
Query: 1100 KLAKIAKGEKTGGQKDKAIKAIGKKFYKNMLVESDYAGDDYDLFARWI 1243
KLAK K + ++ AIKA GK +YK M+ +SDY ++D F +W+
Sbjct: 359 KLAK--KRKTVTKEEALAIKAAGKSWYKTMISDSDYT--EFDNFTKWL 402
>ref|NP_187574.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana]
gi|17369604|sp|Q9SF40|RL4B_ARATH 60S ribosomal protein
L4-2 (L1) gi|6682241|gb|AAF23293.1|AC016661_18 putative
60S ribosomal protein L1 [Arabidopsis thaliana]
gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22
[Arabidopsis thaliana] gi|27311665|gb|AAO00798.1|
putative 60S ribosomal protein L1 [Arabidopsis thaliana]
gi|30725664|gb|AAP37854.1| At3g09630 [Arabidopsis
thaliana]
Length = 406
Score = 357 bits (917), Expect = 3e-97
Identities = 203/408 (49%), Positives = 268/408 (64%), Gaps = 4/408 (0%)
Frame = +2
Query: 32 AAAIPMVEVHSIE---TGEKAAQVALPGRLHRRPSARISCAAIHTQHGEEQRARPYAAVH 202
AAA P+V + +++ + ++++ V LP + P +H Q R +PYA
Sbjct: 4 AAARPLVTIQTLDGDMSTDQSSTVVLPDVM-TAPVRPDIVNFVHAQISNNSR-QPYAVSK 61
Query: 203 EGRPPRPLPSLGALVAPCRVFPVCPCGWYPPAPARVPSATCAAVVACSPHTKVWRRWHRK 382
+ S G A R+ P P G A C +P TK+WRRWHR+
Sbjct: 62 KAGHQTSAESWGTGRAVSRI-PRVPGGGTHRAGQAAFGNMCRGGRMFAP-TKIWRRWHRR 119
Query: 383 INVNQKRYAVVSALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKTSKALEILKKI 562
+NVN KR+A+VSA+AA+A+PALVMARGHKIE VP +PLV+ D+ E V+KTS A+++LK+I
Sbjct: 120 VNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQI 179
Query: 563 GALPDVEKSKDSKSLRAGKGKMRNRRYVMRKGPLVVFAND-EGISKAFRNLPGVEVTSVD 739
GA D EK+K+S +R GKGKMRNRRY+ RKGPLVV+ + I KAFRNLPGVE+ V+
Sbjct: 180 GAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVE 239
Query: 740 RLNLLQLAPGGHLGRFCIWSKSAFEKLDKVFGTDTTESEQKKGYKLPRACMANGDLARLI 919
RLNLL+LAPGGHLGRF IW+KSAFEKL+ ++G+ SE+KKGY LPRA M N DLAR+I
Sbjct: 240 RLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARII 299
Query: 920 NSDEIQSAVRPAKSAGPKHAPLKKNPLRNLGAMLKLNPYAKVARRVEITRSTKKAAKRSE 1099
NSDEIQS V P K K A LKKNPL+NL MLKLNPYAK A+R+ + ++ + E
Sbjct: 300 NSDEIQSVVNPIKK-DAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKE 358
Query: 1100 KLAKIAKGEKTGGQKDKAIKAIGKKFYKNMLVESDYAGDDYDLFARWI 1243
KLAK K + ++ AIKA GK +YK M+ +SDY ++D F +W+
Sbjct: 359 KLAK--KRKTVTKEEALAIKAAGKSWYKTMISDSDYT--EFDNFTKWL 402
