Database

Plants related

Kazusa Genome DataBase

A portal website for the plant genome databases generated by KDRI

Kazusa Transcript DataBase

Kazusa Marker DataBase

A database for DNA markers and genetic/physical maps of 13 plant species analyzed at KDRI

Plant Genome DataBase Japan (PGDBj)

A database of integrated genomic information of plants

Metabolome

  • KOMICS A portal site for databases and tools for metabolomics research
  • KomicMarket A database for MS spectral information of metabolites
  • MassBase An MST database of metabolites
  • MS-MS Fragment Viewer An MS/MS spectral database for flavonoid compounds
  • KaPPA-View A metabolic pathway database of Arabidopsis thaliana
  • Metabolonote A metadata database for experimental details of metabolome analysis

Others

  • KATANA An integrated database of Arabidopsis thaliana
  • MiBASE An EST and unigene database of Solanum lycopersicum (tomato)
  • KaFTom A full-length sequence (HTC) and EST database of Solanum lycopersicum (tomato)
  • TACWeb A database of vectors for transformation-competent bacterial artificial chromosome (TAC) for Arabidopsis thaliana
  • CoP  A database for plant co-expressed gene network
  • RnR A database for regulatory network in T87 cultured cells of Arabidopsis thaliana
  • DAGViz GO analysis database for genes in eukaryotic genomes

Software

  • Genotype Matrix Mapping A database of computer programs for detecting QTL interactions
  • Plant phenotyping software A database of image analysis software for plant phenotyping
  • Polyans A database of software for typing polymorphic bands on electrophoresis gels
  • KAGIANA A database of Excel-based tools for retrieving genomic information and co-expressed genes in Arabidopsis thaliana
  • ConfeitoGUI A database of tools for correlation network analysis

Human related

cDNA project

  • HUGE A database of human unidentified genes encoding large proteins
  • ROUGE A database of human unidentified genes encoding large proteins
  • CREATE portal A portal site for the Collaboration of Regional Entities for the Advancement of Technological Excellence.
  • KOP A database of human protein-expressing clones (Flexi ORF clones)

FTP