Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021537A_C01 KMC021537A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH46701.1| Similar to membrane bound C2 domain containing pr... 34 0.46
gb|EAA17108.1| hypothetical protein [Plasmodium yoelii yoelii] 33 0.60
gb|AAB91359.1| cytochrome b [Dennyus singhi] 32 1.3
gb|AAO82265.1| hemK protein [Enterococcus faecalis V583] 31 3.0
ref|NP_702436.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.0
>gb|AAH46701.1| Similar to membrane bound C2 domain containing protein [Xenopus
laevis]
Length = 876
Score = 33.9 bits (76), Expect = 0.46
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 225 PLPSAKKDDVLGFIFPFLFGIFYFFCKFFIIEFPIFLVDILNRNILFPWSIKLLVM 58
P+ +A D G I + G+FY F K FI+ FP++++ + F W + LV+
Sbjct: 24 PIAAAVAADEQGMISVDIAGLFYQFSKTFILIFPVYVLGYF--GLSFSWLLIALVL 77
>gb|EAA17108.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 83
Score = 33.5 bits (75), Expect = 0.60
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = -1
Query: 177 FLFGIFYFFCKFFIIEFPIFLVDILNRNILFP 82
FLF IFYF FFI FP F+ L ILFP
Sbjct: 27 FLFSIFYF--SFFIFYFPFFIFHFLFFFILFP 56
>gb|AAB91359.1| cytochrome b [Dennyus singhi]
Length = 147
Score = 32.3 bits (72), Expect = 1.3
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = -1
Query: 231 SNPLPSAKKDDVLGFIFPFL-----FG-IFYFFCKFFI-IEFPIF 118
SNPL K D + F PF FG IF+FFC FF+ ++FP F
Sbjct: 103 SNPLGLGKNSDKV-FFHPFFTLKDFFGFIFFFFCLFFLSLKFPTF 146
>gb|AAO82265.1| hemK protein [Enterococcus faecalis V583]
Length = 277
Score = 31.2 bits (69), Expect = 3.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 413 ASIFGHSLIIDNHTFIPKEAYESSSEESLK 324
A +GHS I++ HT IP+ E E LK
Sbjct: 77 AEFYGHSFIVNEHTLIPRPETEELVERCLK 106
>ref|NP_702436.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497620|gb|AAN37160.1|AE014825_19 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3018
Score = 31.2 bits (69), Expect = 3.0
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Frame = -2
Query: 425 YDEMASIFGHSLII--DNHTFIPKEAYESSSEESLKDTRKGSEHVSENELKSAAACFSLT 252
Y + SIF H L + DN+ F+P ++ + E+ K K E NE K + S+T
Sbjct: 1082 YTKPFSIFYHHLFLRKDNNVFLPHFRKQNVNNENEKSKTKRFEKEKHNEEKKSINDESIT 1141
Query: 251 SVN 243
VN
Sbjct: 1142 WVN 1144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,486,946
Number of Sequences: 1393205
Number of extensions: 7145258
Number of successful extensions: 21429
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 20385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21330
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
