Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021490A_C01 KMC021490A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_032174.1| glycoprotein 5 (platelet); glycoprotein V (plat... 39 0.047
gb|AAF08787.1| platelet glycoprotein V [Mus musculus] gi|2632717... 36 0.31
ref|NP_711378.1| putative regulation protein [Leptospira interro... 33 3.4
gb|EAA28065.1| hypothetical protein [Neurospora crassa] 32 5.8
ref|NP_197379.1| F-box protein; protein id: At5g18780.1 [Arabido... 32 7.6
>ref|NP_032174.1| glycoprotein 5 (platelet); glycoprotein V (platelet); GP V [Mus
musculus] gi|3183012|sp|O08742|GPV_MOUSE Platelet
glycoprotein V precursor (GPV) (CD42D)
gi|2104845|emb|CAA93441.1| platelet glycoprotein V [Mus
musculus]
Length = 567
Score = 38.9 bits (89), Expect = 0.047
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = -1
Query: 471 QGIGLNFQFERITFVRNQLVST*AISTRDKSR*HMHRIGGLKWIR*STTQGNFLSIVIYN 292
QGI N F +T ++ Q++S IS D + + LK +R + + + L I +
Sbjct: 62 QGILRNHSFSGMTVLQRQMLSDSHISAIDPGT--FNDLVKLKTLRLTRNKISRLPRAILD 119
Query: 291 IFNIALLQNFC-HKQPKPFSE--FYCFRNLQTLGLNQRFSLTIPLVRYFKTWRYSYTCEL 121
+ L Q F H + + F RNLQ LGLNQ +P F + R +L
Sbjct: 120 KM-VLLEQLFLDHNALRDLDQNLFQQLRNLQELGLNQNQLSFLP-ANLFSSLRELKLLDL 177
Query: 120 TNKFLAPLPGKLCGFRFKLKSLFVYTIYIT 31
+ L LP L G + KL+ L +Y+ +T
Sbjct: 178 SRNNLTHLPKGLLGAQVKLEKLLLYSNQLT 207
>gb|AAF08787.1| platelet glycoprotein V [Mus musculus] gi|26327175|dbj|BAC27331.1|
unnamed protein product [Mus musculus]
Length = 567
Score = 36.2 bits (82), Expect = 0.31
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Frame = -1
Query: 471 QGIGLNFQFERITFVRNQLVST*AISTRDKSR*HMHRIGGLKWIR*STTQGNFLSIVIYN 292
QGI N F +T ++ ++S IS D + + LK +R + + + L I +
Sbjct: 62 QGILRNHSFSGMTVLQRLMLSDSHISAIDPGT--FNDLVKLKTLRLTRNKISRLPRAILD 119
Query: 291 IFNIALLQNFC-HKQPKPFSE--FYCFRNLQTLGLNQRFSLTIPLVRYFKTWRYSYTCEL 121
+ L Q F H + + F RNLQ LGLNQ +P F + R +L
Sbjct: 120 KM-VLLEQLFLDHNALRDLDQNLFQQLRNLQELGLNQNQLSFLP-ANLFSSLRELKLLDL 177
Query: 120 TNKFLAPLPGKLCGFRFKLKSLFVYTIYIT 31
+ L LP L G + KL+ L +Y+ +T
Sbjct: 178 SRNNLTHLPKGLLGAQVKLEKLLLYSNQLT 207
>ref|NP_711378.1| putative regulation protein [Leptospira interrogans serovar lai
str. 56601] gi|24194747|gb|AAN48396.1|AE011302_4
putative regulation protein [Leptospira interrogans
serovar lai str. 56601]
Length = 463
Score = 32.7 bits (73), Expect = 3.4
Identities = 25/72 (34%), Positives = 37/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 324 QGNFLSIVIY--NIFNIALLQNFCHKQPKPFSEFYCFRNLQTLGLNQRFSLTIPLVRYFK 151
Q FLS VI+ N+ I LL N H+ FY FR+L++L + + L I + F+
Sbjct: 92 QERFLSWVIHISNVIIIFLLMNLFHES------FYHFRDLESLQIYNNYFLLISFIVIFQ 145
Query: 150 TWRYSY-TCELT 118
+R +C LT
Sbjct: 146 MFRLKKGSCFLT 157
>gb|EAA28065.1| hypothetical protein [Neurospora crassa]
Length = 1026
Score = 32.0 bits (71), Expect = 5.8
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Frame = -1
Query: 186 FSLTIPLVRYFKTWRYSYTCELT--NKFLAPLPGKLC 82
F T+PL+R + TW SY+ ++ +L PL G +C
Sbjct: 399 FQRTLPLLRVYMTWLCSYSKDIVEFQAYLEPLYGNMC 435
>ref|NP_197379.1| F-box protein; protein id: At5g18780.1 [Arabidopsis thaliana]
Length = 441
Score = 31.6 bits (70), Expect = 7.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 56 KLFNLNRKPHSFPGNGAKNLLVNSQVYEYLQVLKYRTRG 172
K F L R H + GNG +++++ EYL + Y+ +G
Sbjct: 208 KSFTLKRTDHDYVGNGEYTVVIDTPRLEYLNLKDYQCQG 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,919,510
Number of Sequences: 1393205
Number of extensions: 8762572
Number of successful extensions: 15935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15931
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
