Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021488A_C01 KMC021488A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61310.1| unknown [Arabidopsis thaliana] 42 0.004
ref|NP_568706.1| expressed protein; protein id: At5g49100.1, sup... 42 0.004
ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus] 32 4.5
ref|NP_000100.2| dystrophin Dp427c isoform [Homo sapiens] 32 5.9
gb|AAA74506.1| dystrophin 32 5.9
>gb|AAM61310.1| unknown [Arabidopsis thaliana]
Length = 388
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 4/44 (9%)
Frame = -2
Query: 523 ASPMRAFSRQN-SSKDNKRVS---SVKNPTPNLSAIPSLLTVRS 404
ASPMRAF+ + S K + +S + KN TPNL AIPSLL+VRS
Sbjct: 345 ASPMRAFTSSSYSGKRGRTISDSTTSKNTTPNLGAIPSLLSVRS 388
>ref|NP_568706.1| expressed protein; protein id: At5g49100.1, supported by cDNA:
116332., supported by cDNA: gi_18377645 [Arabidopsis
thaliana] gi|10176943|dbj|BAB10092.1|
gene_id:K20J1.7~unknown protein [Arabidopsis thaliana]
gi|18377646|gb|AAL66973.1| unknown protein [Arabidopsis
thaliana] gi|22136864|gb|AAM91776.1| unknown protein
[Arabidopsis thaliana]
Length = 396
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 4/44 (9%)
Frame = -2
Query: 523 ASPMRAFSRQN-SSKDNKRVS---SVKNPTPNLSAIPSLLTVRS 404
ASPMRAF+ + S K + +S + KN TPNL AIPSLL+VRS
Sbjct: 353 ASPMRAFTSSSYSGKRGRTISDSTTSKNTTPNLGAIPSLLSVRS 396
>ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus]
Length = 115
Score = 32.0 bits (71), Expect = 4.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 348 LVLSACCCY-ISMLFIITLSISSLFILRVGHSFLSLL 241
LVL +CCCY + LF++TL I L+I+ F+ +L
Sbjct: 20 LVLMSCCCYCLVCLFVLTLQIFWLYIVLSDFVFVLIL 56
>ref|NP_000100.2| dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 31.6 bits (70), Expect = 5.9
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -1
Query: 500 PPKLFQGQQEGFFCEESNSKFISYSFIAHCQKLKQKLGK*KKKKSHLE 357
P ++ + Q F E K +S + HCQKL++++ K +K ++H++
Sbjct: 1003 PSEISRKYQSEFEEIEGRWKKLSSQLVEHCQKLEEQMNKLRKIQNHIQ 1050
>gb|AAA74506.1| dystrophin
Length = 428
Score = 31.6 bits (70), Expect = 5.9
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -1
Query: 500 PPKLFQGQQEGFFCEESNSKFISYSFIAHCQKLKQKLGK*KKKKSHLE 357
P ++ + Q F E K +S + HCQKL++++ K +K ++H++
Sbjct: 28 PSEISRKYQSEFEEIEGRWKKLSSQLVEHCQKLEEQMNKLRKIQNHIQ 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,274,744
Number of Sequences: 1393205
Number of extensions: 9419481
Number of successful extensions: 25260
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25223
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
