Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021464A_C01 KMC021464A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568005.1| serine C-palmitoyltransferase like protein; pro... 122 2e-27
pir||F85430 serine C-palmitoyltransferase like protein [imported... 122 2e-27
gb|AAK98692.1|AC069158_4 Putative serine palmitoyltransferase [O... 118 3e-26
gb|AAM54154.1|AC104616_13 Putative serine palmitoyltransferase [... 112 2e-24
ref|NP_006406.1| serine palmitoyltransferase, long chain base su... 49 2e-05
>ref|NP_568005.1| serine C-palmitoyltransferase like protein; protein id:
At4g36480.1, supported by cDNA: gi_14488274 [Arabidopsis
thaliana] gi|14488275|dbj|BAB60898.1| serine
palmitoyltransferase [Arabidopsis thaliana]
gi|21539529|gb|AAM53317.1| serine C-palmitoyltransferase
like protein [Arabidopsis thaliana]
gi|23197846|gb|AAN15450.1| serine C-palmitoyltransferase
like protein [Arabidopsis thaliana]
Length = 482
Score = 122 bits (306), Expect = 2e-27
Identities = 62/91 (68%), Positives = 79/91 (86%)
Frame = -3
Query: 467 GFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLP 288
G +++S+ ESPI++L+L KS+GS KDD LLE +A+R LKEDS+ VV+SKRS LDKCRLP
Sbjct: 389 GMSLTSNRESPIVFLKLEKSSGSAKDDLLLLEKMADRALKEDSLLVVSSKRSFLDKCRLP 448
Query: 287 VGIRLFVSAGHSESDLHKASESLKRVAALVL 195
VGI+L+VSAGHSESDL KASESLKR+A+ +L
Sbjct: 449 VGIKLYVSAGHSESDLLKASESLKRLASELL 479
>pir||F85430 serine C-palmitoyltransferase like protein [imported] - Arabidopsis
thaliana gi|4006914|emb|CAB16844.1| serine
C-palmitoyltransferase like protein [Arabidopsis
thaliana] gi|7270596|emb|CAB80314.1| serine
C-palmitoyltransferase like protein [Arabidopsis
thaliana]
Length = 475
Score = 122 bits (306), Expect = 2e-27
Identities = 62/91 (68%), Positives = 79/91 (86%)
Frame = -3
Query: 467 GFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLP 288
G +++S+ ESPI++L+L KS+GS KDD LLE +A+R LKEDS+ VV+SKRS LDKCRLP
Sbjct: 382 GMSLTSNRESPIVFLKLEKSSGSAKDDLLLLEKMADRALKEDSLLVVSSKRSFLDKCRLP 441
Query: 287 VGIRLFVSAGHSESDLHKASESLKRVAALVL 195
VGI+L+VSAGHSESDL KASESLKR+A+ +L
Sbjct: 442 VGIKLYVSAGHSESDLLKASESLKRLASELL 472
>gb|AAK98692.1|AC069158_4 Putative serine palmitoyltransferase [Oryza sativa]
Length = 566
Score = 118 bits (295), Expect = 3e-26
Identities = 62/91 (68%), Positives = 74/91 (81%)
Frame = -3
Query: 467 GFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLP 288
G I+S+ SPI++L+L STGS D LLE I+E+VLKEDSVF+ +KRS+LDKCRLP
Sbjct: 476 GLEIASNILSPIVFLKLKTSTGSAVADLELLEVISEKVLKEDSVFIAATKRSSLDKCRLP 535
Query: 287 VGIRLFVSAGHSESDLHKASESLKRVAALVL 195
VGIRLFVSAGH+ESD+ K SESLKRVAA VL
Sbjct: 536 VGIRLFVSAGHTESDILKVSESLKRVAASVL 566
>gb|AAM54154.1|AC104616_13 Putative serine palmitoyltransferase [Oryza sativa (japonica
cultivar-group)] gi|22725967|gb|AAN04967.1| putative
serine palmitoyltransferase [Oryza sativa (japonica
cultivar-group)]
Length = 481
Score = 112 bits (280), Expect = 2e-24
Identities = 59/91 (64%), Positives = 71/91 (77%)
Frame = -3
Query: 467 GFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLP 288
G I+S+ SPI++L+L TGS D LLE IAE+VL EDSVF+ +KRS+LDKCRLP
Sbjct: 391 GLEIASNILSPIVFLKLKTPTGSAVADLELLEIIAEKVLMEDSVFIAATKRSSLDKCRLP 450
Query: 287 VGIRLFVSAGHSESDLHKASESLKRVAALVL 195
VGIRLFVSAGH+ESD+ K S SLKRVAA V+
Sbjct: 451 VGIRLFVSAGHTESDIFKVSASLKRVAASVV 481
>ref|NP_006406.1| serine palmitoyltransferase, long chain base subunit 1; serine
palmitoyltransferase subunit I [Homo sapiens]
gi|6685579|sp|O15269|LCB1_HUMAN Serine
palmitoyltransferase 1 (Long chain base biosynthesis
protein 1) (LCB 1) (Serine-palmitoyl-CoA transferase 1)
(SPT 1) (SPT1) gi|2564247|emb|CAA69941.1| serine
palmitoyltransferase, subunit I [Homo sapiens]
gi|13540158|gb|AAK29328.1| serine palmitoyltransferase
[Homo sapiens]
Length = 473
Score = 49.3 bits (116), Expect = 2e-05
Identities = 27/91 (29%), Positives = 45/91 (48%)
Frame = -3
Query: 467 GFTISSHPESPIIYLRLLKSTGSVKDDQHLLENIAERVLKEDSVFVVTSKRSTLDKCRLP 288
G + SP +L+L +STGS + D LL+ I ++ + +KC P
Sbjct: 382 GLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPP 441
Query: 287 VGIRLFVSAGHSESDLHKASESLKRVAALVL 195
IR+ V+ +E +L +A+ ++K VA VL
Sbjct: 442 PSIRVVVTVEQTEEELERAASTIKEVAQAVL 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,840,263
Number of Sequences: 1393205
Number of extensions: 7307711
Number of successful extensions: 16877
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16874
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
