Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021449A_C01 KMC021449A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN77147.1| fiber lipid transfer protein [Gossypium barbadense] 128 6e-29
gb|AAF35186.1|AF195865_1 lipid transfer protein precursor [Gossy... 127 8e-29
gb|AAF35185.1|AF195864_1 lipid transfer protein precursor [Gossy... 127 8e-29
gb|AAG29777.1| lipid transfer protein 3 precursor [Gossypium hir... 127 1e-28
pir||T09790 lipid transfer protein precursor - upland cotton gi|... 127 1e-28
>gb|AAN77147.1| fiber lipid transfer protein [Gossypium barbadense]
Length = 120
Score = 128 bits (321), Expect = 6e-29
Identities = 59/119 (49%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Frame = -2
Query: 576 MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLR-NPTPTVPAACCNGI 400
MA+++ LK A +AV+ MV+G+P A A+ CGQ+T ++APCIGYL N VP CC GI
Sbjct: 1 MASSMSLKLACVAVLCMVVGAPLAHGAVTCGQVTSSLAPCIGYLTGNGAGGVPPGCCGGI 60
Query: 399 RDILRQAKTVPDRQGVCRCLKSTVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTV 223
+ + A+T PDRQ C+C+KS + GIN + +PGKCG + YKISPS DCN+V
Sbjct: 61 KSLNSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCNSV 119
>gb|AAF35186.1|AF195865_1 lipid transfer protein precursor [Gossypium hirsutum]
Length = 120
Score = 127 bits (320), Expect = 8e-29
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Frame = -2
Query: 576 MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLRNP-TPTVPAACCNGI 400
MA+++ LK A + V+ MV+G+P A A+ CGQ+T ++APCI YLR +P CC+GI
Sbjct: 1 MASSMYLKLACVVVLCMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGI 60
Query: 399 RDILRQAKTVPDRQGVCRCLKSTVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTV 223
+ + A+T PDRQ C+C+KS +PGIN + +PGKCG + YKISPS DC++V
Sbjct: 61 KSLNSAAQTTPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSV 119
>gb|AAF35185.1|AF195864_1 lipid transfer protein precursor [Gossypium hirsutum]
Length = 120
Score = 127 bits (320), Expect = 8e-29
Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Frame = -2
Query: 576 MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLR-NPTPTVPAACCNGI 400
MA+++ LK + V MV+G+P A A+ CGQ+T +APCI YL+ N + P ACCNGI
Sbjct: 1 MASSMSLKLTCVVVFCMVVGAPLAQGAISCGQITSALAPCIAYLKGNGAGSAPPACCNGI 60
Query: 399 RDILRQAKTVPDRQGVCRCLKSTVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTV 223
R + AKT PDRQ C C+KS + GIN A +PGKCG + YKISPS DC ++
Sbjct: 61 RSLNSAAKTTPDRQAACSCIKSAATGISGINYSTAAGLPGKCGINIPYKISPSTDCKSI 119
>gb|AAG29777.1| lipid transfer protein 3 precursor [Gossypium hirsutum]
Length = 120
Score = 127 bits (319), Expect = 1e-28
Identities = 58/119 (48%), Positives = 79/119 (65%), Gaps = 1/119 (0%)
Frame = -2
Query: 576 MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLRNP-TPTVPAACCNGI 400
MA+++ LK A + V+ MV+G+P A A+ CGQ+T ++APCI YLR VP CC+GI
Sbjct: 1 MASSMSLKLACVVVLCMVVGAPLAQGAVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGI 60
Query: 399 RDILRQAKTVPDRQGVCRCLKSTVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTV 223
+ + A+T PDRQ CRC+KS + GIN + +PGKCG + YKISPS DCN+V
Sbjct: 61 KSLNSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119
>pir||T09790 lipid transfer protein precursor - upland cotton
gi|2829204|gb|AAC00499.1| lipid transfer protein
precursor [Gossypium hirsutum]
Length = 120
Score = 127 bits (318), Expect = 1e-28
Identities = 59/119 (49%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Frame = -2
Query: 576 MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLR-NPTPTVPAACCNGI 400
MA+++ LK A +AV+ MV+G+P A A+ CGQ+T ++APCIGYL N VP CC GI
Sbjct: 1 MASSMSLKPACVAVLCMVVGAPLAQGAVTCGQVTSSLAPCIGYLTGNGAGGVPPGCCGGI 60
Query: 399 RDILRQAKTVPDRQGVCRCLKSTVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTV 223
+ + A+T PDRQ C+C+KS + GIN + +PGKCG + YKISPS DCN+V
Sbjct: 61 KSLNSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCNSV 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,602,433
Number of Sequences: 1393205
Number of extensions: 12833375
Number of successful extensions: 34220
Number of sequences better than 10.0: 224
Number of HSP's better than 10.0 without gapping: 32842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34060
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
