Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021403A_C01 KMC021403A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504256.1| Predicted CDS, putative membrane protein family... 32 5.5
ref|XP_225409.1| similar to Macrophage migration inhibitory fact... 32 7.2
ref|NP_704952.1| hypothetical protein [Plasmodium falciparum 3D7... 31 9.4
>ref|NP_504256.1| Predicted CDS, putative membrane protein family member, with at
least 4 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7503196|pir||T29735
hypothetical protein F41F3.7 - Caenorhabditis elegans
gi|1280077|gb|AAA97986.1| Hypothetical protein F41F3.7
[Caenorhabditis elegans]
Length = 209
Score = 32.0 bits (71), Expect = 5.5
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 185 VLRNTFTTDENLHPYLGRDLQLTLELEMCVRKMNKYVHIILISDNLYSY-LLYCFYFGTL 9
++ N FT + L YLG++ Q + E M +RK + ++ D+L+ +L+ + F TL
Sbjct: 127 LILNLFTFSKILRFYLGKNGQRSKETSMSIRKNIRMFFQTVLQDSLFLIDVLFTYKFSTL 186
Query: 8 S 6
S
Sbjct: 187 S 187
>ref|XP_225409.1| similar to Macrophage migration inhibitory factor (MIF)
(Phenylpyruvate tautomerase) (Glutathione-binding 13 kDa
protein) [Rattus norvegicus]
Length = 298
Score = 31.6 bits (70), Expect = 7.2
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -2
Query: 194 MWEVLRNTFTTDENLHPYLGRDLQLTLELEMCVRKMNKYVHIILISDNLYSYL--LYCFY 21
+WE ++ T +H LG L+ T +L RK+ +Y+ + ++SD L++ L +Y Y
Sbjct: 226 LWEKANHSIKT---VHGELGFLLEFTQQLAQATRKLAQYISVHMLSDCLHTSLDRVYVNY 282
Query: 20 F 18
+
Sbjct: 283 Y 283
>ref|NP_704952.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615197|emb|CAD52187.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2295
Score = 31.2 bits (69), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = -2
Query: 113 ELEMCVRKMNKYVHIILISDNLYSYLLYCFY 21
E E V K + +H +L+ N+Y LLY FY
Sbjct: 779 EYEYYVEKFEELLHNLLLEKNIYQLLLYTFY 809
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,784,105
Number of Sequences: 1393205
Number of extensions: 9069398
Number of successful extensions: 18657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18644
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
