Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021364A_C01 KMC021364A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565671.1| expressed protein; protein id: At2g28370.1, sup... 110 1e-23
ref|NP_181257.1| unknown protein; protein id: At2g37200.1 [Arabi... 91 7e-18
gb|AAN77295.1| Unknown protein [Oryza sativa (japonica cultivar-... 69 5e-11
ref|NP_188961.1| hypothetical protein; protein id: At3g23200.1 [... 57 1e-07
gb|AAM91511.1| ethylene responsive element binding protein, puta... 57 1e-07
>ref|NP_565671.1| expressed protein; protein id: At2g28370.1, supported by cDNA:
14111., supported by cDNA: gi_14030700 [Arabidopsis
thaliana] gi|25407978|pir||A84684 hypothetical protein
At2g28370 [imported] - Arabidopsis thaliana
gi|4432840|gb|AAD20689.1| expressed protein [Arabidopsis
thaliana] gi|14030701|gb|AAK53025.1|AF375441_1
At2g28370/T1B3.11 [Arabidopsis thaliana]
gi|21553379|gb|AAM62472.1| unknown [Arabidopsis
thaliana] gi|23506069|gb|AAN28894.1| At2g28370/T1B3.11
[Arabidopsis thaliana]
Length = 179
Score = 110 bits (274), Expect = 1e-23
Identities = 51/61 (83%), Positives = 54/61 (87%)
Frame = -3
Query: 538 STLVFAAACASAGITVLIDNDLGSCAKNHCVQFETATGMAFICWFTTLPSFLLNFWSLAS 359
STL FAAACASAGITVLIDNDL SCA+NHCVQFET+T +AFI WF LPSFL NFWSLAS
Sbjct: 119 STLTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLAS 178
Query: 358 R 356
R
Sbjct: 179 R 179
>ref|NP_181257.1| unknown protein; protein id: At2g37200.1 [Arabidopsis thaliana]
gi|25408537|pir||G84789 hypothetical protein At2g37200
[imported] - Arabidopsis thaliana
gi|4371281|gb|AAD18139.1| unknown protein [Arabidopsis
thaliana]
Length = 179
Score = 91.3 bits (225), Expect = 7e-18
Identities = 45/60 (75%), Positives = 48/60 (80%)
Frame = -3
Query: 538 STLVFAAACASAGITVLIDNDLGSCAKNHCVQFETATGMAFICWFTTLPSFLLNFWSLAS 359
STL FAAA ASAGITVLI NDLG C NHC +FETAT MAFI WF PSF+LNFWSLA+
Sbjct: 120 STLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLAT 178
>gb|AAN77295.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 226
Score = 68.6 bits (166), Expect = 5e-11
Identities = 29/44 (65%), Positives = 36/44 (80%)
Frame = -3
Query: 538 STLVFAAACASAGITVLIDNDLGSCAKNHCVQFETATGMAFICW 407
+ L F+AACAS+GITVLIDNDL C++NHC FE+AT MAF+ W
Sbjct: 85 AALTFSAACASSGITVLIDNDLDLCSENHCASFESATAMAFLSW 128
>ref|NP_188961.1| hypothetical protein; protein id: At3g23200.1 [Arabidopsis
thaliana]
Length = 125
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (61%), Gaps = 1/61 (1%)
Frame = -3
Query: 538 STLVFAAACASAGITVLIDNDLGSCA-KNHCVQFETATGMAFICWFTTLPSFLLNFWSLA 362
STL A A +SAGITVL DLGSC+ + C +++ + +AF+CW T S L W LA
Sbjct: 64 STLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLA 123
Query: 361 S 359
S
Sbjct: 124 S 124
>gb|AAM91511.1| ethylene responsive element binding protein, putative [Arabidopsis
thaliana]
Length = 152
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (61%), Gaps = 1/61 (1%)
Frame = -3
Query: 538 STLVFAAACASAGITVLIDNDLGSCA-KNHCVQFETATGMAFICWFTTLPSFLLNFWSLA 362
STL A A +SAGITVL DLGSC+ + C +++ + +AF+CW T S L W LA
Sbjct: 91 STLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLA 150
Query: 361 S 359
S
Sbjct: 151 S 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,669,067
Number of Sequences: 1393205
Number of extensions: 9148616
Number of successful extensions: 23520
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23512
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
