Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021339A_C01 KMC021339A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF29528.1|AF213504_1 putative cell-wall P4 protein [Brassica... 44 0.002
gb|AAF29529.1|AF213505_1 putative cell-wall P8 protein [Brassica... 43 0.003
ref|NP_565490.1| expressed protein; protein id: At2g20870.1, sup... 40 0.017
gb|AAM63440.1| putative cell wall protein [Arabidopsis thaliana] 40 0.017
pir||S43789 probable cell wall protein (clone pAt2191) - Arabido... 40 0.017
>gb|AAF29528.1|AF213504_1 putative cell-wall P4 protein [Brassica napus]
Length = 147
Score = 43.5 bits (101), Expect = 0.002
Identities = 27/61 (44%), Positives = 30/61 (48%), Gaps = 6/61 (9%)
Frame = -2
Query: 597 GVGPVGFPPK--HGLIPQNPFTGGAGRAGTGAGA----GSGSGRPGRSYVPGGDDTLVP* 436
GVG PPK P NP TG G+ G G G G R+ +PGGDDTLVP
Sbjct: 62 GVGRFLLPPKCKKPFYPYNPVTGAPLTGGSIGGQIPSFGGGQGGGARTQLPGGDDTLVPN 121
Query: 435 P 433
P
Sbjct: 122 P 122
>gb|AAF29529.1|AF213505_1 putative cell-wall P8 protein [Brassica napus]
Length = 147
Score = 42.7 bits (99), Expect = 0.003
Identities = 27/61 (44%), Positives = 30/61 (48%), Gaps = 6/61 (9%)
Frame = -2
Query: 597 GVGPVGFPPK--HGLIPQNPFTGGAGRAGTGAGA----GSGSGRPGRSYVPGGDDTLVP* 436
GVG PPK P NP TG G+ G G G G R+ +PGGDDTLVP
Sbjct: 62 GVGRFLLPPKCKKPFYPYNPVTGAPLTGGSIGGQIPSFGGGQGGGTRTQLPGGDDTLVPN 121
Query: 435 P 433
P
Sbjct: 122 P 122
>ref|NP_565490.1| expressed protein; protein id: At2g20870.1, supported by cDNA:
2512. [Arabidopsis thaliana]
gi|27735182|sp|P47925|CWPX_ARATH Putative cell wall
protein precursor gi|25370638|pir||D84594 hypothetical
protein At2g20870 [imported] - Arabidopsis thaliana
gi|4454461|gb|AAD20908.1| expressed protein [Arabidopsis
thaliana]
Length = 140
Score = 40.4 bits (93), Expect = 0.017
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 597 GVGPVGFPPK--HGLIPQNPFTGGAGRAGTGAGAGSGSGRPGRSYVPGGDDTLVP*P 433
GVG PPK P NP TG G G G + +PGGDDTLVP P
Sbjct: 59 GVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNP 115
>gb|AAM63440.1| putative cell wall protein [Arabidopsis thaliana]
Length = 140
Score = 40.4 bits (93), Expect = 0.017
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 597 GVGPVGFPPK--HGLIPQNPFTGGAGRAGTGAGAGSGSGRPGRSYVPGGDDTLVP*P 433
GVG PPK P NP TG G G G + +PGGDDTLVP P
Sbjct: 59 GVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNP 115
>pir||S43789 probable cell wall protein (clone pAt2191) - Arabidopsis thaliana
gi|475046|emb|CAA52404.1| putative cell wall protein
[Arabidopsis thaliana]
Length = 140
Score = 40.4 bits (93), Expect = 0.017
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 597 GVGPVGFPPK--HGLIPQNPFTGGAGRAGTGAGAGSGSGRPGRSYVPGGDDTLVP*P 433
GVG PPK P NP TG G G G + +PGGDDTLVP P
Sbjct: 59 GVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNP 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,528,193
Number of Sequences: 1393205
Number of extensions: 13760073
Number of successful extensions: 140218
Number of sequences better than 10.0: 281
Number of HSP's better than 10.0 without gapping: 60301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113644
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
