Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021330A_C01 KMC021330A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565952.1| expressed protein; protein id: At2g41640.1, sup... 81 2e-19
gb|AAL47575.2| symbiosis-related protein [Daucus carota] 83 1e-17
ref|NP_191297.1| putative protein; protein id: At3g57380.1 [Arab... 77 2e-17
ref|NP_187643.1| unknown protein; protein id: At3g10320.1 [Arabi... 62 2e-15
dbj|BAC15469.1| contains ESTs AU062472(C11331),AU092186(C11331)~... 66 6e-12
>ref|NP_565952.1| expressed protein; protein id: At2g41640.1, supported by cDNA:
gi_13877688, supported by cDNA: gi_16930450 [Arabidopsis
thaliana] gi|7487597|pir||T00820 hypothetical protein
At2g41640 [imported] - Arabidopsis thaliana
gi|2618699|gb|AAB84346.1| expressed protein [Arabidopsis
thaliana] gi|13877689|gb|AAK43922.1|AF370603_1 Unknown
protein [Arabidopsis thaliana]
gi|16930451|gb|AAL31911.1|AF419579_1 At2g41640/T32G6.16
[Arabidopsis thaliana] gi|27764926|gb|AAO23584.1|
At2g41640/T32G6.16 [Arabidopsis thaliana]
Length = 500
Score = 80.9 bits (198), Expect(2) = 2e-19
Identities = 34/51 (66%), Positives = 44/51 (85%)
Frame = -2
Query: 401 KMDPILRDPASINEKGWEYTKKIYLDSQNVKLDLRRFRKRLLRSYEYTVSK 249
K DP++RDP S+N+KGWEYTKKIYL QNVKLDLRRFR+ L RSY++++ +
Sbjct: 438 KDDPVIRDPDSLNDKGWEYTKKIYLQGQNVKLDLRRFRETLTRSYDFSIRR 488
Score = 35.4 bits (80), Expect(2) = 2e-19
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -1
Query: 453 IGYEIHPRESSLYEKYDKNGPYSKRP 376
+GY+I P+ESSLYE+Y K+ P + P
Sbjct: 421 VGYKIAPKESSLYEEYGKDDPVIRDP 446
>gb|AAL47575.2| symbiosis-related protein [Daucus carota]
Length = 249
Score = 82.8 bits (203), Expect(2) = 1e-17
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = -2
Query: 401 KMDPILRDPASINEKGWEYTKKIYLDSQNVKLDLRRFRKRLLRSYEYTVSKSNLRLQHQP 222
K+DP+L DP S+N +G E+TKKIYLD QNVKL+LRRF KRL R+Y Y+++K N L HQ
Sbjct: 189 KVDPVLTDPDSVNNRGCEFTKKIYLDRQNVKLNLRRFLKRLQRAYRYSMAKKNGHLHHQN 248
Query: 221 Q 219
Q
Sbjct: 249 Q 249
Score = 27.7 bits (60), Expect(2) = 1e-17
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 447 YEIHPRESSLYEKYDKNGPYSKRP 376
Y+I P+ESSLY +Y+K P P
Sbjct: 174 YKILPQESSLYNEYEKVDPVLTDP 197
>ref|NP_191297.1| putative protein; protein id: At3g57380.1 [Arabidopsis thaliana]
gi|11282419|pir||T45816 hypothetical protein F28O9.230 -
Arabidopsis thaliana gi|6735317|emb|CAB68144.1| putative
protein [Arabidopsis thaliana]
Length = 470
Score = 77.4 bits (189), Expect(2) = 2e-17
Identities = 34/59 (57%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Frame = -2
Query: 395 DPILRDPASINEKGWEYTKKIYLDSQNVKLDLRRFRKRLLRSYEYTVSKSNL-RLQHQP 222
DPI+RDP S +KGW+YTKKIYL+ QNVKLDL+RFRK L R+Y++++ + L + H+P
Sbjct: 408 DPIIRDPKSFTQKGWDYTKKIYLERQNVKLDLKRFRKPLSRAYDFSMKRIGLVYISHKP 466
Score = 32.0 bits (71), Expect(2) = 2e-17
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 453 IGYEIHPRESSLYEKYDKNGPYSKRP 376
IGY+I P+ESSLY++Y + P + P
Sbjct: 389 IGYKIKPKESSLYDEYGIDDPIIRDP 414
>ref|NP_187643.1| unknown protein; protein id: At3g10320.1 [Arabidopsis thaliana]
gi|6056194|gb|AAF02811.1|AC009400_7 unknown protein
[Arabidopsis thaliana] gi|28973746|gb|AAO64189.1|
unknown protein [Arabidopsis thaliana]
Length = 494
Score = 62.4 bits (150), Expect(2) = 2e-15
Identities = 27/49 (55%), Positives = 38/49 (77%)
Frame = -2
Query: 401 KMDPILRDPASINEKGWEYTKKIYLDSQNVKLDLRRFRKRLLRSYEYTV 255
K DPIL+DP SI +KGW++TK IYL+ Q V+LDL RF+K L+ +Y ++
Sbjct: 445 KDDPILKDPNSITKKGWQFTKGIYLNDQKVRLDLHRFKKLLIDAYAKSI 493
Score = 40.4 bits (93), Expect(2) = 2e-15
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -1
Query: 450 GYEIHPRESSLYEKYDKNGPYSKRP 376
GY+I PRESSLYEKYDK+ P K P
Sbjct: 429 GYKILPRESSLYEKYDKDDPILKDP 453
>dbj|BAC15469.1| contains ESTs AU062472(C11331),AU092186(C11331)~similar to
symbiosis-related protein [Oryza sativa (japonica
cultivar-group)] gi|22831280|dbj|BAC16135.1| contains
ESTs AU062472(C11331),AU092186(C11331)~similar to
symbiosis-related protein [Oryza sativa (japonica
cultivar-group)]
Length = 555
Score = 65.9 bits (159), Expect(2) = 6e-12
Identities = 28/59 (47%), Positives = 42/59 (70%)
Frame = -2
Query: 395 DPILRDPASINEKGWEYTKKIYLDSQNVKLDLRRFRKRLLRSYEYTVSKSNLRLQHQPQ 219
DP+L DPA + ++GW+ TKK+YLD QNV+LDL RFR+ L+ ++ + V+ R Q + Q
Sbjct: 497 DPVLTDPAGVGKRGWDVTKKVYLDRQNVRLDLPRFREVLVGAHRHLVAGKRRRRQRESQ 555
Score = 25.0 bits (53), Expect(2) = 6e-12
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 453 IGYEIHPRESSLYEKYDKNGPYSKRP 376
+GY+I P ESSL +Y P P
Sbjct: 478 VGYKILPEESSLSREYPTGDPVLTDP 503
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,679,992
Number of Sequences: 1393205
Number of extensions: 6413161
Number of successful extensions: 16662
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16654
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
