Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021317A_C01 KMC021317A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_144147.2| similar to gene 11-1 protein precursor [Plasmod... 33 2.3
ref|NP_049843.1| Nrd.1 hypothetical protein [Enterobacteria phag... 33 2.3
ref|NP_013232.1| involved in transcriptional regulation of CUP1.... 33 3.0
ref|NP_175895.1| proline-rich protein, putative; protein id: At1... 32 3.9
ref|XP_218624.1| similar to adaptor-related protein complex AP-2... 32 6.6
>ref|XP_144147.2| similar to gene 11-1 protein precursor [Plasmodium falciparum 3D7]
[Mus musculus]
Length = 848
Score = 33.1 bits (74), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = -1
Query: 223 LPSPNFLNDPKRCLNSPSNPLFVGYKPTNTKPTNNKPT-LILGLYHHSPPKHPPCPQ 56
LPS D + ++ P+ + P T+P ++ T +L Y HSPP+ CPQ
Sbjct: 619 LPSTELSEDAQSTVSGTQRPVRHAHSPPQTRPLSSTDTPTVLHRYAHSPPQ--TCPQ 673
>ref|NP_049843.1| Nrd.1 hypothetical protein [Enterobacteria phage T4]
gi|731246|sp|P39505|Y13L_BPT4 Hypothetical 9.4 kDa
protein in nrdB-nrdA intergenic region
gi|5354418|gb|AAD42625.1|AF158101_212 Nrd.1 hypothetical
protein [Enterobacteria phage T4]
Length = 83
Score = 33.1 bits (74), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 169 NPLFVGYKPTNTKPTNNKPTLILGLYHHSPPKHPPCPQGGKK*NK 35
NP++ PT P + ++ L ++PPCP GKK NK
Sbjct: 22 NPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNK 66
>ref|NP_013232.1| involved in transcriptional regulation of CUP1. enters nucleus only
at the end of mitosis.; Ace2p [Saccharomyces cerevisiae]
gi|113022|sp|P21192|ACE2_YEAST Metallothionein
expression activator gi|72897|pir||TWBYA2 transcription
factor ACE2 - yeast (Saccharomyces cerevisiae)
gi|170976|gb|AAA34387.1| metallothionein expression
activator gi|995694|emb|CAA62643.1| metallothionein
expression activator [Saccharomyces cerevisiae]
gi|1256905|gb|AAB82398.1| Ace2p: Transcriptional
activator of CUP1 [Saccharomyces cerevisiae]
gi|1360543|emb|CAA97702.1| ORF YLR131c [Saccharomyces
cerevisiae]
Length = 770
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = +3
Query: 288 GFIFHNIILSIFFLAGS*QCAMNLIHEKGP*SIVNEAQNYQNCNPSYPLYTSIQENDIEG 467
GF+ HN LSI L Q +N+ + P ++NE N+ + + I+END E
Sbjct: 128 GFLGHNKTLSISSLQ---QSILNMSKDPQPMELINELGNHNTVKNNNDDFDHIRENDGEN 184
Query: 468 SF 473
S+
Sbjct: 185 SY 186
>ref|NP_175895.1| proline-rich protein, putative; protein id: At1g54970.1
[Arabidopsis thaliana] gi|25405783|pir||B96591
proline-rich protein 1 [imported] - Arabidopsis thaliana
gi|9857527|gb|AAG00882.1|AC064840_13 proline-rich
protein 1 [Arabidopsis thaliana]
gi|12322156|gb|AAG51112.1|AC069144_9 proline-rich
protein, putative [Arabidopsis thaliana]
Length = 335
Score = 32.3 bits (72), Expect = 3.9
Identities = 18/42 (42%), Positives = 20/42 (46%)
Frame = -1
Query: 151 YKPTNTKPTNNKPTLILGLYHHSPPKHPPCPQGGKK*NKRPT 26
YKPT + P KPTL +Y SP PP P K PT
Sbjct: 162 YKPTLSPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPT 203
>ref|XP_218624.1| similar to adaptor-related protein complex AP-2, alpha 1 subunit
[Mus musculus] [Rattus norvegicus]
Length = 939
Score = 31.6 bits (70), Expect = 6.6
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = -1
Query: 205 LNDPKRCLNSPSNPLFVGYKPTNTKPTNNKPTL-ILGLYHHSPPKHPPCPQGG 50
L+D +R ++ SN + G +PT + + P+ +LGL PP PP P GG
Sbjct: 652 LDDSRR--DTSSNDINGGVEPTPSNVSTPSPSADLLGLRAAPPPAAPPAPVGG 702
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,495,883
Number of Sequences: 1393205
Number of extensions: 10642235
Number of successful extensions: 23381
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23295
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
