Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021307A_C01 KMC021307A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum] 33 0.79
gb|AAM34316.2| similar to Dictyostelium discoideum (Slime mold).... 33 0.79
gb|AAN33173.1| putative type I specificity subunit HsdS [Campylo... 32 1.8
gb|AAN33144.1| putative type I specificity subunit HsdS [Campylo... 32 2.3
gb|AAN33128.1| putative type I specificity subunit HsdS [Campylo... 32 2.3
>gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum]
Length = 2843
Score = 33.1 bits (74), Expect = 0.79
Identities = 16/49 (32%), Positives = 30/49 (60%)
Frame = -2
Query: 428 TPLASNIPSQMMEPVTTIVAENVASSNEHIKTTTSTKTKKNMIPLNAAN 282
TP+ S I S ++ PV++ V +SS+ I +TS + ++IP+++ N
Sbjct: 760 TPILSPISSPIISPVSSPVTSPSSSSHSKISPSTSLERISDLIPISSPN 808
>gb|AAM34316.2| similar to Dictyostelium discoideum (Slime mold). SgcA
Length = 2183
Score = 33.1 bits (74), Expect = 0.79
Identities = 16/49 (32%), Positives = 30/49 (60%)
Frame = -2
Query: 428 TPLASNIPSQMMEPVTTIVAENVASSNEHIKTTTSTKTKKNMIPLNAAN 282
TP+ S I S ++ PV++ V +SS+ I +TS + ++IP+++ N
Sbjct: 100 TPILSPISSPIISPVSSPVTSPSSSSHSKISPSTSLERISDLIPISSPN 148
>gb|AAN33173.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
Length = 402
Score = 32.0 bits (71), Expect = 1.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = -2
Query: 449 NAMEMAATPLASNIPSQMMEPV------TTIVAENVASSNEHIKTTTSTKTKKNMIPLNA 288
+A++ A PL N P ++EN+++ + K T +KT KN IP+ A
Sbjct: 201 SALQKAFNPLKDNAKENYKLPQGWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYA 260
Query: 287 ANVSD 273
VS+
Sbjct: 261 NGVSN 265
>gb|AAN33144.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
Length = 378
Score = 31.6 bits (70), Expect = 2.3
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
Frame = -2
Query: 449 NAMEMAATPLASNIPSQMMEPVT------TIVAENVASSNEHIKTTTSTKTKKNMIPLNA 288
+A++ A PL N P + ++EN+++ + K T +KT KN IP+ A
Sbjct: 177 SALQKAFNPLKDNAKENYKLPQSWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYA 236
Query: 287 ANVSD 273
V++
Sbjct: 237 NGVNN 241
>gb|AAN33128.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
gi|23452715|gb|AAN33131.1| putative type I specificity
subunit HsdS [Campylobacter jejuni]
gi|23452757|gb|AAN33147.1| putative type I specificity
subunit HsdS [Campylobacter jejuni]
Length = 398
Score = 31.6 bits (70), Expect = 2.3
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
Frame = -2
Query: 449 NAMEMAATPLASNIPSQMMEPVT------TIVAENVASSNEHIKTTTSTKTKKNMIPLNA 288
+A++ A PL N P + ++EN+++ + K T +KT KN IP+ A
Sbjct: 197 SALQKAFNPLKDNAKENYKLPQSWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYA 256
Query: 287 ANVSD 273
V++
Sbjct: 257 NGVNN 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,928,068
Number of Sequences: 1393205
Number of extensions: 7621299
Number of successful extensions: 19779
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19769
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
