KMC021262A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC021262A_C01 KMC021262A_c01
agttcaggacaagttttattaggatgaattcTTCAACTTAACACAGGCTGCCAACCTCAG
AAACCAACTCCAAGTTAATATCCACATACTTTATTTTTTGCTACTACGGAAAATTACAAG
AAAAAACAACACTAAATAGGGAACCGAGAATCCCAAAGCAGTAAAGGTTCCAGTTCTACC
AAAGGCCTCTCCAAGCTCCGCACACAAGCTAGGGAAAAAGAAGCACCTGCTCGCGCCAAG
GCATCTGCCGGAGCATTCGCATCTCTACTGATACCATCAAGCACAACTCTTAATACGGCG
AAACCAAGCTTTCAACATAATCCAAGGCTAAGTACCAAGAAAATTTGTACCGACAAAATT
CTCTATTTGTAGTTGTAGGTTGCTCAAATGTGTTGGAGCTCCTGTTATAGAGTATTGCTT
GACGACCAACCGCCAATACCAGTGTATCACCATTGTAAAATAATCGATAGGCATAACTTA
ATGGATGAAGGAAACACTCTTTATGATGAGTGAATGGTGAAAGGCGACGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021262A_C01 KMC021262A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB15778.1| FLJ00087 protein [Homo sapiens] 35 0.55
ref|XP_029084.4| similar to FLJ00087 protein [Homo sapiens] 35 0.55
ref|NP_511060.2| swallow CG3429-PA gi|730853|sp|P40688|SWA_DROME... 34 1.2
gb|ZP_00107621.1| hypothetical protein [Nostoc punctiforme] 33 2.1
gb|AAH30281.1| hypothetical protein FLJ21438 [Homo sapiens] 33 2.7
>dbj|BAB15778.1| FLJ00087 protein [Homo sapiens]
Length = 674
Score = 35.0 bits (79), Expect = 0.55
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = +2
Query: 152 PKAVKVPV---LPKASPSSAHKLGKKKHLLAPRHLPEHSHLY*YHQAQLLIRRNQAF 313
P V VP+ LP A S+ G+K LAPR LP+H+ L Q+ +RR++++
Sbjct: 472 PVLVSVPMRLPLPPAQVHSSLSAGEKPGFLAPRDLPKHTPLISKSQSLRSVRRSESW 528
>ref|XP_029084.4| similar to FLJ00087 protein [Homo sapiens]
Length = 478
Score = 35.0 bits (79), Expect = 0.55
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = +2
Query: 152 PKAVKVPV---LPKASPSSAHKLGKKKHLLAPRHLPEHSHLY*YHQAQLLIRRNQAF 313
P V VP+ LP A S+ G+K LAPR LP+H+ L Q+ +RR++++
Sbjct: 276 PVLVSVPMRLPLPPAQVHSSLSAGEKPGFLAPRDLPKHTPLISKSQSLRSVRRSESW 332
>ref|NP_511060.2| swallow CG3429-PA gi|730853|sp|P40688|SWA_DROME Swallow protein
gi|103178|pir||S20806 swallow protein - fruit fly
(Drosophila melanogaster) gi|8684|emb|CAA39500.1|
swallow [Drosophila melanogaster]
gi|17862310|gb|AAL39632.1| LD21771p [Drosophila
melanogaster] gi|22831818|gb|AAF46160.3| CG3429-PA
[Drosophila melanogaster]
Length = 548
Score = 33.9 bits (76), Expect = 1.2
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 101 LLRKITRKNN--TK*GTENPKAVKVPVLPKASPSSAHKLGKKKHLLAPRHLPEHSHLY*Y 274
L+R+ NN T + N A++V + PSS + ++ L++PR +H +Y +
Sbjct: 382 LVRRTPAPNNSETSQPSSNDSAIEVEAHEEERPSSRRQWEQQGELISPRQWGQHEGMYYF 441
Query: 275 HQAQLLIRRNQAFNIIQG 328
+ + FNI QG
Sbjct: 442 DKRNNRVIEVMGFNISQG 459
>gb|ZP_00107621.1| hypothetical protein [Nostoc punctiforme]
Length = 851
Score = 33.1 bits (74), Expect = 2.1
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +1
Query: 28 ILQLNTGCQPQKPTPS*YPHTLFFATTENYKKKQH*IGNRESQSSK----GSSSTKGLSK 195
+L L T QP+K T +++N K + + G E Q S+ ++ +
Sbjct: 37 VLTLGTNQQPEKDTSQ-------LDSSKNLKSRSNLTGIIEEQKSRIVAVYPANPAAMPA 89
Query: 196 LRTQAREKEAPARAKASAGAFASLLIPSSTTLNTAKPSFQHNP 324
+ T+ R + A A A+ G +++P+STTL TA+ + Q NP
Sbjct: 90 VVTE-RSRSAGGHAYATPG----VIVPTSTTLKTAQQTPQINP 127
>gb|AAH30281.1| hypothetical protein FLJ21438 [Homo sapiens]
Length = 264
Score = 32.7 bits (73), Expect = 2.7
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = +2
Query: 176 LPKASPSSAHKLGKKKHLLAPRHLPEHSHLY*YHQAQLLIRRNQAF 313
LP A S+ G+K LAPR LP+H+ L Q+ +RR++++
Sbjct: 5 LPPAQVHSSLSAGEKPGFLAPRDLPKHTPLISKSQSLRSVRRSESW 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,610,294
Number of Sequences: 1393205
Number of extensions: 9271772
Number of successful extensions: 23569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23551
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MF060d07_f |
BP031464 |
1 |
530 |
2 |
MF040h03_f |
BP030409 |
32 |
529 |
|
Lotus japonicus
Kazusa DNA Research Institute