Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021260A_C01 KMC021260A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55449.1|AC069300_4 putative transcription factor [Oryza sa... 162 4e-39
ref|NP_182031.1| GATA zinc finger protein; protein id: At2g45050... 159 3e-38
dbj|BAC05593.1| OSJNBa0014K08.18 [Oryza sativa (japonica cultiva... 147 1e-34
ref|NP_191612.1| GATA zinc finger protein; protein id: At3g60530... 146 2e-34
ref|NP_197955.1| GATA zinc finger protein; protein id: At5g25830... 143 1e-33
>gb|AAK55449.1|AC069300_4 putative transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 387
Score = 162 bits (409), Expect = 4e-39
Identities = 79/107 (73%), Positives = 89/107 (82%), Gaps = 1/107 (0%)
Frame = -3
Query: 553 GKSRSKRAAAVEGSPAG-EGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLV 377
G SR K++ G+ G E GVRRC+HCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL+
Sbjct: 254 GGSRGKKSPGPAGAEVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 313
Query: 376 PEYRPAASPTFVLSQHSNSHRKVRELRRQKELIRHQQQPQQPAAAAS 236
PEYRPAASPTFVL+QHSNSHRKV ELRRQKEL+ + + AAAA+
Sbjct: 314 PEYRPAASPTFVLTQHSNSHRKVMELRRQKELLIIRGSHRDAAAAAA 360
>ref|NP_182031.1| GATA zinc finger protein; protein id: At2g45050.1 [Arabidopsis
thaliana] gi|25352345|pir||T52104 GATA-binding
transcription factor homolog 2 [imported] - Arabidopsis
thaliana gi|2959732|emb|CAA74000.1| homologous to
GATA-binding transcription factors [Arabidopsis
thaliana] gi|24030302|gb|AAN41321.1| putative GATA-type
zinc finger transcription factor [Arabidopsis thaliana]
Length = 264
Score = 159 bits (401), Expect = 3e-38
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 553 GKSRSKRAAAVEGSPAGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP 374
G+ +S + EG GG+RRC+HCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP
Sbjct: 163 GRHQSSSSETTEG-----GGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP 217
Query: 373 EYRPAASPTFVLSQHSNSHRKVRELRRQKELIRHQQQPQ 257
EYRPA+SPTFVL+QHSNSHRKV ELRRQKE++R QQ Q
Sbjct: 218 EYRPASSPTFVLTQHSNSHRKVMELRRQKEVMRQPQQVQ 256
>dbj|BAC05593.1| OSJNBa0014K08.18 [Oryza sativa (japonica cultivar-group)]
Length = 387
Score = 147 bits (370), Expect = 1e-34
Identities = 73/99 (73%), Positives = 82/99 (82%), Gaps = 2/99 (2%)
Frame = -3
Query: 508 AGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLSQH 329
AGEG RRC HC ++KTPQWRTGP+GPKTLCNACGVR+KSGRLVPEYRPAASPTF++S+H
Sbjct: 258 AGEG--RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKH 315
Query: 328 SNSHRKVRELRRQKELIRHQQQP--QQPAAAASQDQGYL 218
SNSHRKV ELRRQKE+ HQQ P QP AA+ G L
Sbjct: 316 SNSHRKVLELRRQKEM--HQQTPHHHQPQVAAAGGVGSL 352
>ref|NP_191612.1| GATA zinc finger protein; protein id: At3g60530.1, supported by
cDNA: gi_14190406, supported by cDNA: gi_14517394,
supported by cDNA: gi_15215890 [Arabidopsis thaliana]
gi|11282352|pir||T47864 GATA transcription factor 4 -
Arabidopsis thaliana gi|2959736|emb|CAA74002.1|
homologous to GATA-binding transcription factors
[Arabidopsis thaliana] gi|7288001|emb|CAB81839.1| GATA
transcription factor 4 [Arabidopsis thaliana]
gi|14190407|gb|AAK55684.1|AF378881_1 AT3g60530/T8B10_190
[Arabidopsis thaliana] gi|14517395|gb|AAK62588.1|
AT3g60530/T8B10_190 [Arabidopsis thaliana]
gi|15215891|gb|AAK91489.1| AT3g60530/T8B10_190
[Arabidopsis thaliana]
Length = 240
Score = 146 bits (369), Expect = 2e-34
Identities = 76/122 (62%), Positives = 82/122 (66%), Gaps = 29/122 (23%)
Frame = -3
Query: 562 SVTGKSRSKRAAAVEGSPAGE-----------------------------GGVRRCSHCA 470
S TGK RS+R+ A S AG G RRC+HCA
Sbjct: 105 SFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGARRCTHCA 164
Query: 469 SEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLSQHSNSHRKVRELRRQ 290
SEKTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPA+SPTFVL+QHSNSHRKV ELRRQ
Sbjct: 165 SEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQ 224
Query: 289 KE 284
KE
Sbjct: 225 KE 226
>ref|NP_197955.1| GATA zinc finger protein; protein id: At5g25830.1 [Arabidopsis
thaliana]
Length = 331
Score = 143 bits (361), Expect = 1e-33
Identities = 68/93 (73%), Positives = 77/93 (82%)
Frame = -3
Query: 553 GKSRSKRAAAVEGSPAGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP 374
G R K ++ E A E RRC HCA++KTPQWRTGP+GPKTLCNACGVR+KSGRLVP
Sbjct: 201 GHRRKKDVSSPESGGAEE---RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 257
Query: 373 EYRPAASPTFVLSQHSNSHRKVRELRRQKELIR 275
EYRPAASPTFVL++HSNSHRKV ELRRQKE+ R
Sbjct: 258 EYRPAASPTFVLAKHSNSHRKVMELRRQKEMSR 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,364,597
Number of Sequences: 1393205
Number of extensions: 14052275
Number of successful extensions: 112571
Number of sequences better than 10.0: 604
Number of HSP's better than 10.0 without gapping: 74843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105806
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
