Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021259A_C01 KMC021259A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65013.1| unknown [Arabidopsis thaliana] 58 6e-08
ref|NP_567518.1| expressed protein; protein id: At4g16850.1, sup... 57 2e-07
dbj|BAB89002.1| P0401G10.10 [Oryza sativa (japonica cultivar-gro... 35 0.44
ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.57
ref|NP_690564.1| carboxylesterase [Heliothis zea virus 1] gi|226... 35 0.57
>gb|AAM65013.1| unknown [Arabidopsis thaliana]
Length = 313
Score = 58.2 bits (139), Expect = 6e-08
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Frame = -3
Query: 535 MEGNRVCGWVLSGLFVLGSSSIGSKVERL---MDGEDSIGVEDKAV----------LIVS 395
M+G R+ G L+G+FV SS IG +E+L +D + S G ++V L+
Sbjct: 216 MKGRRITGLALAGVFVFLSSFIGHGMEKLAKELDMDVSSGSWWRSVVVAGGWDGWKLVCM 275
Query: 394 YGFMVLWSYVIMTVFYCHCRKQHPVKEAQPDPDE 293
YG V+ SYV++TVFYC CRK+H +A +E
Sbjct: 276 YGAEVVLSYVVITVFYCECRKRHGSSDAIVSDEE 309
>ref|NP_567518.1| expressed protein; protein id: At4g16850.1, supported by cDNA:
35772. [Arabidopsis thaliana]
Length = 313
Score = 56.6 bits (135), Expect = 2e-07
Identities = 34/83 (40%), Positives = 49/83 (58%), Gaps = 13/83 (15%)
Frame = -3
Query: 535 MEGNRVCGWVLSGLFVLGSSSIGSKVERL---MDGEDSIGVEDKAV----------LIVS 395
M+G R+ G L+G+FV SS IG +E+L +D + S G ++V L+
Sbjct: 216 MKGRRITGLALAGVFVFLSSFIGHGMEKLAKELDMDLSSGSWWRSVVVAGGWDGWKLVCM 275
Query: 394 YGFMVLWSYVIMTVFYCHCRKQH 326
YG V+ SYV++TVFYC CRK+H
Sbjct: 276 YGAEVVLSYVVITVFYCECRKRH 298
>dbj|BAB89002.1| P0401G10.10 [Oryza sativa (japonica cultivar-group)]
Length = 380
Score = 35.4 bits (80), Expect = 0.44
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 418 PQLQSNP---HRPSTAPLSTRSSSTPKRTNPTEPTRKPGSP 531
P+ Q +P RP + P+ R+ ++P R T P R+PGSP
Sbjct: 152 PRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGSP 192
>ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496006|gb|AAN35668.1|AE014837_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1477
Score = 35.0 bits (79), Expect = 0.57
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Frame = +1
Query: 325 DAVFYNGSRTLS*SHNSTAP*IRTKLSKPLY-PQLQSNPHR-PSTAPLSTRSSSTPKRTN 498
D++FY S++ S S S+ LS PL P S+P PS++P S+ SSS ++
Sbjct: 529 DSIFYKSSQSKSSSQLSSP------LSSPLSSPSPSSSPSSSPSSSPSSSPSSSPSPSSS 582
Query: 499 PT-------EPTRKPGSPPS 537
P+ P+ P SPPS
Sbjct: 583 PSPSSSPSSSPSSSPSSPPS 602
>ref|NP_690564.1| carboxylesterase [Heliothis zea virus 1]
gi|22671610|gb|AAN04437.1|AF451898_144 carboxylesterase
[Heliothis zea virus 1]
Length = 698
Score = 35.0 bits (79), Expect = 0.57
Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 4/41 (9%)
Frame = +1
Query: 418 PQLQSNPHRPSTAPLSTRSSSTPKRTNPT----EPTRKPGS 528
P L +NP RPST ST S+T K T PT +P RKP +
Sbjct: 585 PTLSNNPTRPSTTHNSTLPSTTHKPTLPTSIFLKPIRKPNN 625
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,070,505
Number of Sequences: 1393205
Number of extensions: 10332103
Number of successful extensions: 54541
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 49492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53997
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
