Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021256A_C01 KMC021256A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65259.1| unknown [Arabidopsis thaliana] 82 3e-15
ref|NP_564056.1| expressed protein; protein id: At1g18520.1, sup... 81 9e-15
ref|NP_194772.1| senescence-associated protein homolog; protein ... 80 2e-14
gb|AAM61510.1| senescence-associated protein-like protein [Arabi... 77 2e-13
ref|NP_179961.2| hypothetical protein; protein id: At2g23810.1, ... 75 5e-13
>gb|AAM65259.1| unknown [Arabidopsis thaliana]
Length = 272
Score = 82.4 bits (202), Expect = 3e-15
Identities = 35/65 (53%), Positives = 45/65 (68%)
Frame = -3
Query: 512 AANXSDCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYA 333
AA DC TW N Q +LC++CNACK G L NIR +WR+L +FN +L L+ T+Y GC A
Sbjct: 200 AAENGDCGTWSNVQTELCFNCNACKAGVLTNIREKWRNLLVFNICLLILLITVYSCGCCA 259
Query: 332 IKNNR 318
+NNR
Sbjct: 260 RRNNR 264
>ref|NP_564056.1| expressed protein; protein id: At1g18520.1, supported by cDNA:
37937. [Arabidopsis thaliana]
gi|6714308|gb|AAF26004.1|AC013354_23 F15H18.1
[Arabidopsis thaliana]
Length = 271
Score = 80.9 bits (198), Expect = 9e-15
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = -3
Query: 509 ANXSDCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYAI 330
A DC TW N Q +LC++CNACK G L NIR +WR+L +FN +L L+ T+Y GC A
Sbjct: 200 AENGDCGTWSNVQTELCFNCNACKAGVLANIREKWRNLLVFNICLLILLITVYSCGCCAR 259
Query: 329 KNNR 318
+NNR
Sbjct: 260 RNNR 263
>ref|NP_194772.1| senescence-associated protein homolog; protein id: At4g30430.1,
supported by cDNA: 122632. [Arabidopsis thaliana]
gi|25352435|pir||H85355 senescence-associated protein
homolog [imported] - Arabidopsis thaliana
gi|7269944|emb|CAB79761.1| senescence-associated protein
homolog [Arabidopsis thaliana]
Length = 272
Score = 79.7 bits (195), Expect = 2e-14
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = -3
Query: 500 SDCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYAIKNN 321
SDC+ WDN++ KLCY+C ACK GFL N++ W+ + I N + L L+ +Y +GC A +NN
Sbjct: 199 SDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIFLVLLVVVYAMGCCAFRNN 258
Query: 320 RWD 312
+ D
Sbjct: 259 KED 261
>gb|AAM61510.1| senescence-associated protein-like protein [Arabidopsis thaliana]
Length = 272
Score = 76.6 bits (187), Expect = 2e-13
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = -3
Query: 500 SDCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYAIKNN 321
SDC+ WDN++ KLCY+C ACK GFL N++ W+ + I N + L L+ +Y + C A +NN
Sbjct: 199 SDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIFLVLLVVVYAMRCCAFRNN 258
Query: 320 RWD 312
+ D
Sbjct: 259 KED 261
>ref|NP_179961.2| hypothetical protein; protein id: At2g23810.1, supported by cDNA:
gi_13272396 [Arabidopsis thaliana]
gi|7486260|pir||T02338 senescence-associated protein
homolog [imported] - Arabidopsis thaliana
gi|13272397|gb|AAK17137.1|AF325069_1 unknown protein
[Arabidopsis thaliana]
Length = 195
Score = 75.1 bits (183), Expect = 5e-13
Identities = 27/62 (43%), Positives = 43/62 (68%)
Frame = -3
Query: 497 DCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYAIKNNR 318
DC+TWDN ++KLC+DC +CK G L N+++ W+ + I N + L + +Y +GC A +NN+
Sbjct: 123 DCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFRNNK 182
Query: 317 WD 312
D
Sbjct: 183 RD 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,396,916
Number of Sequences: 1393205
Number of extensions: 10047147
Number of successful extensions: 26481
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 25089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26450
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
