Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021255A_C01 KMC021255A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196360.1| pectinesterase family; protein id: At5g07430.1 ... 88 8e-17
ref|NP_200976.1| pectinesterase family; protein id: At5g61680.1 ... 84 1e-15
dbj|BAB09012.1| pectin methylesterase-like protein [Arabidopsis ... 84 1e-15
gb|AAO22801.1| putative pectinesterase [Arabidopsis thaliana] 82 3e-15
ref|NP_177152.1| pectinesterase family; protein id: At1g69940.1 ... 82 3e-15
>ref|NP_196360.1| pectinesterase family; protein id: At5g07430.1 [Arabidopsis
thaliana] gi|11358605|pir||T49882 pectin
methyl-esterase-like protein - Arabidopsis thaliana
gi|7576181|emb|CAB87932.1| pectin methyl-esterase-like
protein [Arabidopsis thaliana]
Length = 361
Score = 87.8 bits (216), Expect = 8e-17
Identities = 37/79 (46%), Positives = 54/79 (67%)
Frame = -1
Query: 548 RVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVK 369
+V+YA+ M+ VVN +GW + ++ Y TVF+GEYK GPG+ ++ R Y + + +V
Sbjct: 282 KVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVPYTQDIDKNEVT 341
Query: 368 PFITLASIEGSKWLLPPPK 312
PF+TL I+GS WLLPPPK
Sbjct: 342 PFLTLGYIKGSTWLLPPPK 360
>ref|NP_200976.1| pectinesterase family; protein id: At5g61680.1 [Arabidopsis
thaliana]
Length = 338
Score = 83.6 bits (205), Expect = 1e-15
Identities = 37/78 (47%), Positives = 51/78 (64%)
Frame = -1
Query: 548 RVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVK 369
+V+YAY MS VVN +GW + A TVF+GEYK +G G+ + R +Y + + D + K
Sbjct: 259 KVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVKYTQDIDDIEAK 318
Query: 368 PFITLASIEGSKWLLPPP 315
FI+L I+GS WLLPPP
Sbjct: 319 YFISLGYIQGSSWLLPPP 336
>dbj|BAB09012.1| pectin methylesterase-like protein [Arabidopsis thaliana]
Length = 364
Score = 83.6 bits (205), Expect = 1e-15
Identities = 37/78 (47%), Positives = 51/78 (64%)
Frame = -1
Query: 548 RVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVK 369
+V+YAY MS VVN +GW + A TVF+GEYK +G G+ + R +Y + + D + K
Sbjct: 285 KVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVKYTQDIDDIEAK 344
Query: 368 PFITLASIEGSKWLLPPP 315
FI+L I+GS WLLPPP
Sbjct: 345 YFISLGYIQGSSWLLPPP 362
>gb|AAO22801.1| putative pectinesterase [Arabidopsis thaliana]
Length = 361
Score = 82.4 bits (202), Expect = 3e-15
Identities = 35/78 (44%), Positives = 50/78 (63%)
Frame = -1
Query: 548 RVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVK 369
+V+YAY M+ VVN GW + + + TVF+GEYK SGPG+ R + + + D +
Sbjct: 282 KVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDDKEAN 341
Query: 368 PFITLASIEGSKWLLPPP 315
F++L I+GSKWLLPPP
Sbjct: 342 RFLSLGYIQGSKWLLPPP 359
>ref|NP_177152.1| pectinesterase family; protein id: At1g69940.1 [Arabidopsis
thaliana] gi|25404855|pir||H96721 probable pectin
methylesterase T17F3.3 [imported] - Arabidopsis thaliana
gi|12325236|gb|AAG52566.1|AC010675_14 putative pectin
methylesterase; 8433-9798 [Arabidopsis thaliana]
Length = 338
Score = 82.4 bits (202), Expect = 3e-15
Identities = 35/78 (44%), Positives = 50/78 (63%)
Frame = -1
Query: 548 RVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVK 369
+V+YAY M+ VVN GW + + + TVF+GEYK SGPG+ R + + + D +
Sbjct: 259 KVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDDKEAN 318
Query: 368 PFITLASIEGSKWLLPPP 315
F++L I+GSKWLLPPP
Sbjct: 319 RFLSLGYIQGSKWLLPPP 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,972,604
Number of Sequences: 1393205
Number of extensions: 9404753
Number of successful extensions: 24109
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 23344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24069
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
