Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021254A_C01 KMC021254A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565477.1| 26S proteasome regulatory subunit S2 (RPN1); pr... 155 2e-37
pir||A84591 26S proteasome regulatory subunit S2 [imported] - Ar... 155 2e-37
dbj|BAB78497.1| 26S proteasome regulatory particle non-ATPase su... 146 1e-34
dbj|BAB78496.1| 26S proteasome regulatory particle non-ATPase su... 143 1e-33
dbj|BAB32124.1| unnamed protein product [Mus musculus] 125 3e-28
>ref|NP_565477.1| 26S proteasome regulatory subunit S2 (RPN1); protein id: At2g20580.1
[Arabidopsis thaliana]
gi|13430608|gb|AAK25926.1|AF360216_1 putative 26S
proteasome regulatory subunit S2 [Arabidopsis thaliana]
gi|14532874|gb|AAK64119.1| putative 26S proteasome
regulatory subunit S2 [Arabidopsis thaliana]
gi|20198043|gb|AAD21708.2| 26S proteasome regulatory
subunit S2 (RPN1) [Arabidopsis thaliana]
Length = 891
Score = 155 bits (393), Expect = 2e-37
Identities = 76/80 (95%), Positives = 80/80 (100%)
Frame = -2
Query: 514 LLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIP 335
+LTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAG+RAELAT+KYIP
Sbjct: 812 MLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATDKYIP 871
Query: 334 LSPILEGFVILKENPDYREE 275
LSPILEGF+ILKENPDYREE
Sbjct: 872 LSPILEGFIILKENPDYREE 891
>pir||A84591 26S proteasome regulatory subunit S2 [imported] - Arabidopsis
thaliana
Length = 893
Score = 155 bits (393), Expect = 2e-37
Identities = 76/80 (95%), Positives = 80/80 (100%)
Frame = -2
Query: 514 LLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIP 335
+LTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAG+RAELAT+KYIP
Sbjct: 814 MLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATDKYIP 873
Query: 334 LSPILEGFVILKENPDYREE 275
LSPILEGF+ILKENPDYREE
Sbjct: 874 LSPILEGFIILKENPDYREE 893
>dbj|BAB78497.1| 26S proteasome regulatory particle non-ATPase subunit1b [Oryza
sativa (japonica cultivar-group)]
Length = 238
Score = 146 bits (369), Expect = 1e-34
Identities = 70/80 (87%), Positives = 79/80 (98%)
Frame = -2
Query: 514 LLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIP 335
LLTVDE+LKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAG+RAELATEKY+P
Sbjct: 159 LLTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYLP 218
Query: 334 LSPILEGFVILKENPDYREE 275
L+P+LEGFVIL++NP+Y E+
Sbjct: 219 LTPVLEGFVILRKNPEYHED 238
>dbj|BAB78496.1| 26S proteasome regulatory particle non-ATPase subunit1a [Oryza
sativa (japonica cultivar-group)]
Length = 107
Score = 143 bits (360), Expect = 1e-33
Identities = 69/80 (86%), Positives = 77/80 (96%)
Frame = -2
Query: 514 LLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIP 335
LLTVDE+LKPLSVPV VGQAVDVVGQAGRPKTITGFQTHSTPVLLAAG+RAELATEKY+P
Sbjct: 28 LLTVDEDLKPLSVPVCVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYLP 87
Query: 334 LSPILEGFVILKENPDYREE 275
L+P+LEGFVIL+ NP+Y E+
Sbjct: 88 LTPVLEGFVILRNNPEYHED 107
>dbj|BAB32124.1| unnamed protein product [Mus musculus]
Length = 118
Score = 125 bits (314), Expect = 3e-28
Identities = 59/77 (76%), Positives = 72/77 (92%)
Frame = -2
Query: 514 LLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIP 335
L+T DE L+PL V VRVGQAVDVVGQAG+PKTITGFQTH+TPVLLA G+RAELATE+++P
Sbjct: 40 LVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLP 99
Query: 334 LSPILEGFVILKENPDY 284
++PILEGFVIL++NP+Y
Sbjct: 100 VTPILEGFVILRKNPNY 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,385,186
Number of Sequences: 1393205
Number of extensions: 8732896
Number of successful extensions: 24950
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 24053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24934
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
