Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021253A_C01 KMC021253A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568068.1| putative protein; protein id: At4g39740.1, supp... 109 2e-23
pir||T05011 hypothetical protein T19P19.130 - Arabidopsis thalia... 90 2e-17
gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thal... 60 1e-08
ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1,... 60 1e-08
ref|NP_422297.1| SCO1/2 family protein [Caulobacter crescentus C... 57 2e-07
>ref|NP_568068.1| putative protein; protein id: At4g39740.1, supported by cDNA:
38152. [Arabidopsis thaliana] gi|21593335|gb|AAM65284.1|
unknown [Arabidopsis thaliana]
Length = 276
Score = 109 bits (273), Expect = 2e-23
Identities = 50/76 (65%), Positives = 62/76 (80%)
Frame = -3
Query: 527 QRDTPSQIRAYLKVFDSRIIGLTGPVAAVRQMAQEYHVYSEKVEEDGDDYLVDISKNLFF 348
QRDTPS + AYLK FDSRI+GLTG +A+RQMAQEY VY +KV+EDG+DYLVD S N++
Sbjct: 184 QRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYL 243
Query: 347 LNPRMEVKECFRVE*N 300
+NP+ME+ CF VE N
Sbjct: 244 INPKMEIVRCFGVEYN 259
>pir||T05011 hypothetical protein T19P19.130 - Arabidopsis thaliana
gi|3080443|emb|CAA18760.1| putative protein [Arabidopsis
thaliana] gi|7270958|emb|CAB80637.1| putative protein
[Arabidopsis thaliana]
Length = 429
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/62 (64%), Positives = 51/62 (81%)
Frame = -3
Query: 485 FDSRIIGLTGPVAAVRQMAQEYHVYSEKVEEDGDDYLVDISKNLFFLNPRMEVKECFRVE 306
FDSRI+GLTG +A+RQMAQEY VY +KV+EDG+DYLVD S N++ +NP+ME+ CF VE
Sbjct: 351 FDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYLINPKMEIVRCFGVE 410
Query: 305 *N 300
N
Sbjct: 411 YN 412
>gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thaliana]
Length = 273
Score = 60.5 bits (145), Expect = 1e-08
Identities = 27/65 (41%), Positives = 41/65 (62%)
Frame = -3
Query: 527 QRDTPSQIRAYLKVFDSRIIGLTGPVAAVRQMAQEYHVYSEKVEEDGDDYLVDISKNLFF 348
+RDT Q+ Y+K F ++IGLTG ++ +A+ Y VY K EE+ DYLVD S ++
Sbjct: 181 ERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYL 240
Query: 347 LNPRM 333
++P M
Sbjct: 241 MSPEM 245
>ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1, supported by cDNA:
142032., supported by cDNA: gi_17979326, supported by
cDNA: gi_20465762 [Arabidopsis thaliana]
gi|17979327|gb|AAL49889.1| putative SCO1 protein
[Arabidopsis thaliana] gi|20465763|gb|AAM20370.1|
putative SCO1 protein [Arabidopsis thaliana]
gi|21553398|gb|AAM62491.1| putative SCO1 protein
[Arabidopsis thaliana]
Length = 334
Score = 60.5 bits (145), Expect = 1e-08
Identities = 27/65 (41%), Positives = 41/65 (62%)
Frame = -3
Query: 527 QRDTPSQIRAYLKVFDSRIIGLTGPVAAVRQMAQEYHVYSEKVEEDGDDYLVDISKNLFF 348
+RDT Q+ Y+K F ++IGLTG ++ +A+ Y VY K EE+ DYLVD S ++
Sbjct: 242 ERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYL 301
Query: 347 LNPRM 333
++P M
Sbjct: 302 MSPEM 306
>ref|NP_422297.1| SCO1/2 family protein [Caulobacter crescentus CB15]
gi|25316551|pir||E87683 SCO1/2 family protein [imported]
- Caulobacter crescentus gi|13425229|gb|AAK25465.1|
SCO1/2 family protein [Caulobacter crescentus CB15]
Length = 190
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -3
Query: 527 QRDTPSQIRAYLKVFDSRIIGLTGPVAAVRQMAQEYHVYSEKVEEDGDDYLVDISKNLFF 348
+RDTP+Q++ YL FD RI G TG A+ + A+ Y VY +KV DG Y +D S ++
Sbjct: 102 ERDTPAQLKEYLSNFDPRIQGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIYL 161
Query: 347 LNPR 336
+ +
Sbjct: 162 FDAK 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,523,730
Number of Sequences: 1393205
Number of extensions: 8156442
Number of successful extensions: 20721
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 20316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20702
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
