Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021251A_C01 KMC021251A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); ... 134 4e-31
gb|AAM65777.1| putative pollen surface protein [Arabidopsis thal... 133 9e-31
ref|NP_193009.1| fasciclin-like arabinogalactan-protein (FLA2); ... 133 9e-31
gb|AAK20858.1|AF333971_1 fasciclin-like arabinogalactan-protein ... 133 9e-31
gb|AAM66074.1| endosperm-specific protein-like protein [Arabidop... 132 2e-30
>ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); protein id:
At5g55730.1, supported by cDNA: gi_13377775 [Arabidopsis
thaliana] gi|9758607|dbj|BAB09240.1|
gene_id:MDF20.17~pir||T06631~similar to unknown protein
[Arabidopsis thaliana]
gi|13377776|gb|AAK20857.1|AF333970_1 fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|27311863|gb|AAO00897.1| putative protein [Arabidopsis
thaliana]
Length = 424
Score = 134 bits (338), Expect = 4e-31
Identities = 69/163 (42%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Frame = +1
Query: 13 MLSYFSLLVVLVIFPACTTCFDITKLLSQYPSYSTFSNYLTQTKLADELNNRETVTLLAV 192
M S + +L++ T ++T+LL+ +PS+S+FS++LTQT LADE+N R T+T+ AV
Sbjct: 5 MSSLIIIFNILLLLTTQTHAHNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAV 64
Query: 193 DNAGLAPIS--GEPMDVIKRVLSIHVILDYFDVEKFHNMGDQTITVATLFQTTGQAQGMQ 366
DNA ++ ++ G + +K +LS+HV+LDYF +K H + D + ATLFQ TG A G
Sbjct: 65 DNAAMSALTSKGYTLSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTS 124
Query: 367 GFMKITDLSTGSVTFSSVSDPNATGAKLIKDVFSQPYNISIVQ 495
GF+ ITDL G V F D + +K + PYNISI+Q
Sbjct: 125 GFVNITDLRGGKVGFG--PDGGDLSSFFVKSIEEVPYNISIIQ 165
>gb|AAM65777.1| putative pollen surface protein [Arabidopsis thaliana]
Length = 403
Score = 133 bits (335), Expect = 9e-31
Identities = 63/156 (40%), Positives = 105/156 (66%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 LLVVLVIFPACTTCFDITKLLSQYPSYSTFSNYLTQTKLADELNNRETVTLLAVDNAGLA 210
L+ L +F + + +IT++L++ P +STF++YL+ T LADE+N R+T+T+LAVDN+ ++
Sbjct: 13 LIFQLHLFLSLSNAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMS 72
Query: 211 PI--SGEPMDVIKRVLSIHVILDYFDVEKFHNMGDQTITVATLFQTTGQAQGMQGFMKIT 384
I +G + I+ +LS+HV++DYF +K H + D + + A++FQ+TG A G G++ IT
Sbjct: 73 SILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINIT 132
Query: 385 DLSTGSVTFSSVSDPNATGAKLIKDVFSQPYNISIV 492
D+ G V F D + A +K VF +PYNIS++
Sbjct: 133 DIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVL 168
>ref|NP_193009.1| fasciclin-like arabinogalactan-protein (FLA2); protein id:
At4g12730.1, supported by cDNA: 4620., supported by
cDNA: gi_13377777, supported by cDNA: gi_16974608
[Arabidopsis thaliana] gi|7488019|pir||T06631 pollen
surface protein homolog T20K18.80 - Arabidopsis thaliana
gi|4586249|emb|CAB40990.1| putative pollen surface
protein [Arabidopsis thaliana]
gi|7267974|emb|CAB78315.1| putative pollen surface
protein [Arabidopsis thaliana]
gi|16974609|gb|AAL31207.1| AT4g12730/T20K18_80
[Arabidopsis thaliana] gi|22655474|gb|AAM98329.1|
At4g12730/T20K18_80 [Arabidopsis thaliana]
Length = 403
Score = 133 bits (335), Expect = 9e-31
Identities = 63/156 (40%), Positives = 105/156 (66%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 LLVVLVIFPACTTCFDITKLLSQYPSYSTFSNYLTQTKLADELNNRETVTLLAVDNAGLA 210
L+ L +F + + +IT++L++ P +STF++YL+ T LADE+N R+T+T+LAVDN+ ++
Sbjct: 13 LIFQLHLFLSLSNAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMS 72
Query: 211 PI--SGEPMDVIKRVLSIHVILDYFDVEKFHNMGDQTITVATLFQTTGQAQGMQGFMKIT 384
I +G + I+ +LS+HV++DYF +K H + D + + A++FQ+TG A G G++ IT
Sbjct: 73 SILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINIT 132
Query: 385 DLSTGSVTFSSVSDPNATGAKLIKDVFSQPYNISIV 492
D+ G V F D + A +K VF +PYNIS++
Sbjct: 133 DIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVL 168
>gb|AAK20858.1|AF333971_1 fasciclin-like arabinogalactan-protein 2 [Arabidopsis thaliana]
Length = 403
Score = 133 bits (335), Expect = 9e-31
Identities = 63/156 (40%), Positives = 105/156 (66%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 LLVVLVIFPACTTCFDITKLLSQYPSYSTFSNYLTQTKLADELNNRETVTLLAVDNAGLA 210
L+ L +F + + +IT++L++ P +STF++YL+ T LADE+N R+T+T+LAVDN+ ++
Sbjct: 13 LIFQLHLFLSLSNAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMS 72
Query: 211 PI--SGEPMDVIKRVLSIHVILDYFDVEKFHNMGDQTITVATLFQTTGQAQGMQGFMKIT 384
I +G + I+ +LS+HV++DYF +K H + D + + A++FQ+TG A G G++ IT
Sbjct: 73 SILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINIT 132
Query: 385 DLSTGSVTFSSVSDPNATGAKLIKDVFSQPYNISIV 492
D+ G V F D + A +K VF +PYNIS++
Sbjct: 133 DIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVL 168
>gb|AAM66074.1| endosperm-specific protein-like protein [Arabidopsis thaliana]
Length = 420
Score = 132 bits (332), Expect = 2e-30
Identities = 67/166 (40%), Positives = 105/166 (62%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 SSSTMLSYFSLLVVLVIFPACTTCFDITKLLSQYPSYSTFSNYLTQTKLADELNNRETVT 180
++S S + L+ F + + +IT++L+ P YS+F++YL+QTKLADE+N+R T+T
Sbjct: 2 AASQTFSLLAFTFSLLAFASTVSSHNITQILADSPDYSSFNSYLSQTKLADEINSRTTIT 61
Query: 181 LLAVDNAGLAPISGE-PMDVIKRVLSIHVILDYFDVEKFHNMGDQTITVATLFQTTGQAQ 357
+L ++N ++ ++G+ P+ VIK LS+ V+LDY+D +K H + T TL+QTTG A
Sbjct: 62 VLVLNNGAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAP 121
Query: 358 GMQGFMKITDLSTGSVTFSSVSDPNATGAKLIKDVFSQPYNISIVQ 495
G GF+ ITDL G V F S + + + K V PYNISI++
Sbjct: 122 GNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILE 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,201,948
Number of Sequences: 1393205
Number of extensions: 10696184
Number of successful extensions: 59141
Number of sequences better than 10.0: 446
Number of HSP's better than 10.0 without gapping: 45056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56379
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
