Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021196A_C01 KMC021196A_c01
(997 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65927.1| unknown [Arabidopsis thaliana] 322 6e-87
ref|NP_567960.1| Expressed protein; protein id: At4g34215.1, sup... 317 2e-85
pir||T05414 protein kinase homolog F28A23.20 - Arabidopsis thali... 238 1e-61
ref|NP_190869.1| putative protein; protein id: At3g53010.1 [Arab... 176 5e-43
ref|NP_347168.1| Acetylxylan esterase related enzyme [Clostridiu... 89 1e-16
>gb|AAM65927.1| unknown [Arabidopsis thaliana]
Length = 260
Score = 322 bits (825), Expect = 6e-87
Identities = 167/250 (66%), Positives = 190/250 (75%), Gaps = 3/250 (1%)
Frame = -1
Query: 982 PNEHPPKTKRQIFILSGQSNMAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAAL 803
P P QIFILSGQSNMAGRGGV+K+ HHH WD ++PPEC P+ SILRLSA L
Sbjct: 13 PEIQSPIPPNQIFILSGQSNMAGRGGVVKD-HHHNRWVWDKILPPECAPNSSILRLSADL 71
Query: 802 RWEPAHEPLHTDIDTKKVCGVGPGMCFANAVRRRVGGE---FGLVPCAVGGTPMKEWARG 632
RWE AHEPLH DIDT KVCGVGPGM FANAV+ RV + GLVPCA GGT +KEW RG
Sbjct: 72 RWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRVETDSAVIGLVPCASGGTAIKEWERG 131
Query: 631 EELYENMVKRAKFSVTGDHGGEIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLN 452
LYE MVKR + S GGEIKA+LW+QGESD HDAE+Y NM+ LI N+R DLN
Sbjct: 132 SHLYERMVKRTEES--RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLN 189
Query: 451 LPSLPIIQVAIASGFEYMEKVREAQKGIELPNVICVDAKGFQLKEDNLHLTLEAQVKLGH 272
LPSLPIIQVAIASG Y++KVREAQ G++L NV+CVDAKG LK DNLHLT EAQV+LG
Sbjct: 190 LPSLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGL 249
Query: 271 MLAEAYLTHF 242
LA+AYL++F
Sbjct: 250 SLAQAYLSNF 259
>ref|NP_567960.1| Expressed protein; protein id: At4g34215.1, supported by cDNA:
6401. [Arabidopsis thaliana]
Length = 260
Score = 317 bits (812), Expect = 2e-85
Identities = 165/250 (66%), Positives = 189/250 (75%), Gaps = 3/250 (1%)
Frame = -1
Query: 982 PNEHPPKTKRQIFILSGQSNMAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAAL 803
P P QIFILSGQSNMAGRGGV K+ HH+ WD ++PPEC P+ SILRLSA L
Sbjct: 13 PEIQSPIPPNQIFILSGQSNMAGRGGVFKD-HHNNRWVWDKILPPECAPNSSILRLSADL 71
Query: 802 RWEPAHEPLHTDIDTKKVCGVGPGMCFANAVRRRVGGE---FGLVPCAVGGTPMKEWARG 632
RWE AHEPLH DIDT KVCGVGPGM FANAV+ R+ + GLVPCA GGT +KEW RG
Sbjct: 72 RWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERG 131
Query: 631 EELYENMVKRAKFSVTGDHGGEIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLN 452
LYE MVKR + S GGEIKA+LW+QGESD HDAE+Y NM+ LI N+R DLN
Sbjct: 132 SHLYERMVKRTEES--RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLN 189
Query: 451 LPSLPIIQVAIASGFEYMEKVREAQKGIELPNVICVDAKGFQLKEDNLHLTLEAQVKLGH 272
LPSLPIIQVAIASG Y++KVREAQ G++L NV+CVDAKG LK DNLHLT EAQV+LG
Sbjct: 190 LPSLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGL 249
Query: 271 MLAEAYLTHF 242
LA+AYL++F
Sbjct: 250 SLAQAYLSNF 259
>pir||T05414 protein kinase homolog F28A23.20 - Arabidopsis thaliana
gi|2911040|emb|CAA17550.1| receptor protein kinase-like
protein [Arabidopsis thaliana] gi|7270372|emb|CAB80139.1|
receptor protein kinase-like protein [Arabidopsis
thaliana]
Length = 980
Score = 238 bits (606), Expect = 1e-61
Identities = 123/192 (64%), Positives = 140/192 (72%), Gaps = 3/192 (1%)
Frame = -1
Query: 982 PNEHPPKTKRQIFILSGQSNMAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAAL 803
P P QIFILSGQSNMAGRGGV K+ HH+ WD ++PPEC P+ SILRLSA L
Sbjct: 788 PEIQSPIPPNQIFILSGQSNMAGRGGVFKD-HHNNRWVWDKILPPECAPNSSILRLSADL 846
Query: 802 RWEPAHEPLHTDIDTKKVCGVGPGMCFANAVRRRV---GGEFGLVPCAVGGTPMKEWARG 632
RWE AHEPLH DIDT KVCGVGPGM FANAV+ R+ GLVPCA GGT +KEW RG
Sbjct: 847 RWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERG 906
Query: 631 EELYENMVKRAKFSVTGDHGGEIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLN 452
LYE MVKR + S GGEIKA+LW+QGESD HDAE+Y NM+ LI N+R DLN
Sbjct: 907 SHLYERMVKRTEES--RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLN 964
Query: 451 LPSLPIIQVAIA 416
LPSLPIIQV+++
Sbjct: 965 LPSLPIIQVSLS 976
>ref|NP_190869.1| putative protein; protein id: At3g53010.1 [Arabidopsis thaliana]
gi|11357879|pir||T47558 hypothetical protein F8J2.180 -
Arabidopsis thaliana gi|7529725|emb|CAB86905.1| putative
protein [Arabidopsis thaliana]
Length = 169
Score = 176 bits (446), Expect = 5e-43
Identities = 88/166 (53%), Positives = 110/166 (66%)
Frame = -1
Query: 922 MAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTDIDTKKVCG 743
MAGRGGV + + WDGV+PPEC +PSILRL++ L W+ A EPLH DID K G
Sbjct: 1 MAGRGGVYNDTATNTTV-WDGVIPPECRSNPSILRLTSKLEWKEAKEPLHVDIDINKTNG 59
Query: 742 VGPGMCFANAVRRRVGGEFGLVPCAVGGTPMKEWARGEELYENMVKRAKFSVTGDHGGEI 563
VGPGM FAN V R G + GLVPC++GGT + +W +GE LYE VKRAK ++ GG
Sbjct: 60 VGPGMPFANRVVNRFG-QVGLVPCSIGGTKLSQWQKGEFLYEETVKRAKAAMASGGGGSY 118
Query: 562 KALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQV 425
+A+LW+QGESDT DA YK + ++R DL P+LPIIQV
Sbjct: 119 RAVLWYQGESDTVDMVDASVYKKRLVKFFSDLRNDLQHPNLPIIQV 164
>ref|NP_347168.1| Acetylxylan esterase related enzyme [Clostridium acetobutylicum]
gi|25495842|pir||A96965 acetylxylan esterase related
enzyme [imported] - Clostridium acetobutylicum
gi|15023393|gb|AAK78508.1|AE007568_2 Acetylxylan
esterase related enzyme [Clostridium acetobutylicum]
Length = 282
Score = 89.0 bits (219), Expect = 1e-16
Identities = 72/243 (29%), Positives = 115/243 (46%), Gaps = 12/243 (4%)
Frame = -1
Query: 946 FILSGQSNMAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTD 767
F++ GQSNMAGRG + + P + N+R +++ RW+ EP++ D
Sbjct: 5 FLMLGQSNMAGRGFINEVPMIY-NER---------------IQMLRNGRWQMMTEPINYD 48
Query: 766 IDTKKVCGVGPGMCFANAVRRRVGGEF-GLVPCAVGGTPMKEWARGEELYENMVKRAKFS 590
+ V G+ FA+A ++ + GL+PCA GG+ + EWA L+ + + AKF+
Sbjct: 49 ---RPVSGISLAGSFADAWSQKNQEDIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFA 105
Query: 589 VTGDHGGEIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQVAIASG 410
+ E+ +LW QGESD S + + Y + +I +R++LN+P +PII +
Sbjct: 106 M---ESSELTGILWHQGESD-SLNGNYKVYYKKLLLIIEALRKELNVPDIPIIIGGLGDF 161
Query: 409 F----------EYMEKVREAQK-GIELPNVICVDAKGFQLKEDNLHLTLEAQVKLGHMLA 263
EY +E QK E N V A G D +H+ +Q K G
Sbjct: 162 LGKERFGKGCTEYNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHIDAISQRKFGLRYF 221
Query: 262 EAY 254
EA+
Sbjct: 222 EAF 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,003,811,331
Number of Sequences: 1393205
Number of extensions: 26906236
Number of successful extensions: 122251
Number of sequences better than 10.0: 378
Number of HSP's better than 10.0 without gapping: 93268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117294
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57117888189
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
