Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021133A_C01 KMC021133A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194708.1| putative protein; protein id: At4g29790.1, supp... 58 1e-07
gb|AAO33767.1| putative drought-induced protein [Oryza sativa (i... 36 0.45
gb|AAL24106.1| unknown protein [Arabidopsis thaliana] 35 1.00
ref|NP_565452.1| expressed protein; protein id: At2g19390.1, sup... 35 1.00
gb|AAC54552.1| latent membrane protein 2A gi|1585412|prf||212440... 35 1.00
>ref|NP_194708.1| putative protein; protein id: At4g29790.1, supported by cDNA:
gi_15810172 [Arabidopsis thaliana] gi|7486229|pir||T08540
hypothetical protein F27B13.30 - Arabidopsis thaliana
gi|4914403|emb|CAB43654.1| putative protein [Arabidopsis
thaliana] gi|7269878|emb|CAB79737.1| putative protein
[Arabidopsis thaliana] gi|15810173|gb|AAL06988.1|
AT4g29790/F27B13_30 [Arabidopsis thaliana]
gi|27363444|gb|AAO11641.1| At4g29790/F27B13_30
[Arabidopsis thaliana]
Length = 1211
Score = 57.8 bits (138), Expect = 1e-07
Identities = 28/36 (77%), Positives = 30/36 (82%), Gaps = 1/36 (2%)
Frame = -2
Query: 694 DLGSWLNIDDDALQD-HDFMGXEIPMDDLSDLNMMV 590
DL SWLNIDDDAL D D +G +IPMDDLSDLNMMV
Sbjct: 1176 DLSSWLNIDDDALPDTDDLLGLQIPMDDLSDLNMMV 1211
>gb|AAO33767.1| putative drought-induced protein [Oryza sativa (indica
cultivar-group)]
Length = 465
Score = 36.2 bits (82), Expect = 0.45
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 694 DLGSWLNIDDDALQDHDFMGX-EIPMDDLSDLNMM 593
D+ SWL D D QD D G EIP+DD+++L M
Sbjct: 431 DISSWLTDDLDVPQDFDLSGALEIPLDDIAELGFM 465
>gb|AAL24106.1| unknown protein [Arabidopsis thaliana]
Length = 1211
Score = 35.0 bits (79), Expect = 1.00
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 694 DLGSWLNIDDDALQDHDFMGXEIPMDDLSDLNM 596
D+ SW N+DD+ +D D IP DD+S+LN+
Sbjct: 1179 DINSWFNMDDE--EDFDMTELGIPTDDISELNI 1209
>ref|NP_565452.1| expressed protein; protein id: At2g19390.1, supported by cDNA:
gi_16604626 [Arabidopsis thaliana]
gi|20197016|gb|AAC16469.2| expressed protein [Arabidopsis
thaliana]
Length = 1211
Score = 35.0 bits (79), Expect = 1.00
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 694 DLGSWLNIDDDALQDHDFMGXEIPMDDLSDLNM 596
D+ SW N+DD+ +D D IP DD+S+LN+
Sbjct: 1179 DINSWFNMDDE--EDFDMTELGIPTDDISELNI 1209
>gb|AAC54552.1| latent membrane protein 2A gi|1585412|prf||2124407A LMP2A gene
Length = 482
Score = 35.0 bits (79), Expect = 1.00
Identities = 33/109 (30%), Positives = 48/109 (43%), Gaps = 4/109 (3%)
Frame = -1
Query: 404 LLILKFLT----STVKIFLFKIYFSVI*CKWFAAVATCGCYPDYSPRVRLKLMTDVNVIN 237
LLIL FLT S V+ L K+ V WFA + T P + + L L+ I
Sbjct: 153 LLILAFLTNSQASQVRKLLSKLTALVAVATWFAILMTYLVLPSANNIIVLSLLVAAEGIQ 212
Query: 236 *LLSVFSSDNPVAALLLILWI*SRFWESIIAQAFFFFSIKVLVLNLDYI 90
S++ + L++LW R+W + A F + L+L LD I
Sbjct: 213 ---SIYL----LVMFLMLLWACRRYWRRLSACFGLLFLLCFLLLILDAI 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,918,795
Number of Sequences: 1393205
Number of extensions: 10567153
Number of successful extensions: 26084
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26067
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
