Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021078A_C01 KMC021078A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201323.1| putative protein; protein id: At5g65200.1 [Arab... 96 2e-19
dbj|BAB11506.1| gene_id:K19B1.17~pir||T07721~strong similarity t... 72 4e-12
gb|AAM91572.1| putative protein [Arabidopsis thaliana] gi|231982... 72 4e-12
ref|NP_201062.1| putative protein; protein id: At5g62560.1 [Arab... 72 4e-12
ref|NP_198830.1| putative protein; protein id: At5g40140.1 [Arab... 68 8e-11
>ref|NP_201323.1| putative protein; protein id: At5g65200.1 [Arabidopsis thaliana]
gi|10178181|dbj|BAB11655.1|
gene_id:MQN23.13~pir||T07721~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 556
Score = 96.3 bits (238), Expect = 2e-19
Identities = 56/99 (56%), Positives = 69/99 (69%), Gaps = 7/99 (7%)
Frame = -1
Query: 532 NCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQPMRA------G 371
NCVAAL+ALSH SLRFKGLAKEA+AVEVL+E+EE GTERAREKA+++LQ MR
Sbjct: 458 NCVAALFALSHESLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDE 517
Query: 370 EDQPGS-QFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF 257
ED GS +D + +S+G R+R R G NS+ F
Sbjct: 518 EDGEGSIDWDRVIDSNGSIRSRFRVGGRNRVVTQNSSGF 556
>dbj|BAB11506.1| gene_id:K19B1.17~pir||T07721~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 533
Score = 72.0 bits (175), Expect = 4e-12
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Frame = -1
Query: 532 NCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQPMRA------- 374
NCVA L L G+LRF+GLA EA A EVL E+EE G ER +EKA ++L MR
Sbjct: 436 NCVAVLLTLCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESE 495
Query: 373 -GEDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF 257
GE+ +++ + E+ GL RT+ + G N S+ F
Sbjct: 496 FGENAEAREWNRMLEATGLSRTQFQ--GGQNGGFAYSSQF 533
>gb|AAM91572.1| putative protein [Arabidopsis thaliana] gi|23198286|gb|AAN15670.1|
putative protein [Arabidopsis thaliana]
Length = 559
Score = 72.0 bits (175), Expect = 4e-12
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Frame = -1
Query: 532 NCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQPMRA------- 374
NCVA L L G+LRF+GLA EA A EVL E+EE G ER +EKA ++L MR
Sbjct: 462 NCVAVLLTLCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESE 521
Query: 373 -GEDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF 257
GE+ +++ + E+ GL RT+ + G N S+ F
Sbjct: 522 FGENAEAREWNRMLEATGLSRTQFQ--GGQNGGFAYSSQF 559
>ref|NP_201062.1| putative protein; protein id: At5g62560.1 [Arabidopsis thaliana]
Length = 559
Score = 72.0 bits (175), Expect = 4e-12
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Frame = -1
Query: 532 NCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQPMRA------- 374
NCVA L L G+LRF+GLA EA A EVL E+EE G ER +EKA ++L MR
Sbjct: 462 NCVAVLLTLCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESE 521
Query: 373 -GEDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF 257
GE+ +++ + E+ GL RT+ + G N S+ F
Sbjct: 522 FGENAEAREWNRMLEATGLSRTQFQ--GGQNGGFAYSSQF 559
>ref|NP_198830.1| putative protein; protein id: At5g40140.1 [Arabidopsis thaliana]
Length = 550
Score = 67.8 bits (164), Expect = 8e-11
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Frame = -1
Query: 532 NCVAALYALSH-GSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQPMRAG----- 371
+CVA LY LSH G LRFKGLA A AVE L ++E +G ERA++KARRVL+ +RA
Sbjct: 454 SCVAVLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDD 513
Query: 370 -EDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF 257
+ ++ L S + R+R R G + VNS F
Sbjct: 514 LVENEEIDWEELLNSGDVSRSRCRLGG--EKSCVNSAEF 550
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,293,892
Number of Sequences: 1393205
Number of extensions: 11923262
Number of successful extensions: 142355
Number of sequences better than 10.0: 1801
Number of HSP's better than 10.0 without gapping: 62514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114048
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
