Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC021017A_C01 KMC021017A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F81737 hypothetical protein TC0129 [imported] - Chlamydia m... 100 1e-20
ref|NP_780783.1| hypothetical protein [Clostridium tetani E88] g... 100 1e-20
ref|NP_445524.1| hypothetical protein [Chlamydophila pneumoniae ... 98 7e-20
ref|NP_737498.1| hypothetical protein [Corynebacterium efficiens... 69 3e-11
ref|NP_738153.1| conserved hypothetical protein [Corynebacterium... 69 3e-11
>pir||F81737 hypothetical protein TC0129 [imported] - Chlamydia muridarum
(strain Nigg)
Length = 216
Score = 100 bits (248), Expect = 1e-20
Identities = 59/111 (53%), Positives = 70/111 (62%)
Frame = +2
Query: 107 GTRLEF*LFQSGISLMARTPPEGGLLRPPPKLRRKSPKPIPGNSEAS*GLSVQVQVVRIF 286
G L+ L ++ IS + T G+L L + K IP S+ S GL V +V IF
Sbjct: 98 GIMLDSQLVKTSISTLTPTLLTKGVLSLLAILHITNQKSIPKYSKGSRGLFVLSRVNSIF 157
Query: 287 TDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 439
T +ISPSLS RQCPDRY RAGRNLPDKEFRYL TVIVTAA+H+G G L
Sbjct: 158 TATTISPSLSLRQCPDRYTIRAGRNLPDKEFRYLSTVIVTAAIHQGLGSML 208
>ref|NP_780783.1| hypothetical protein [Clostridium tetani E88]
gi|28209861|ref|NP_780805.1| hypothetical protein
[Clostridium tetani E88] gi|28209981|ref|NP_780925.1|
hypothetical protein [Clostridium tetani E88]
gi|28210288|ref|NP_781232.1| hypothetical protein
[Clostridium tetani E88] gi|28202274|gb|AAO34720.1|
hypothetical protein [Clostridium tetani E88]
gi|28202296|gb|AAO34742.1| hypothetical protein
[Clostridium tetani E88] gi|28202416|gb|AAO34862.1|
hypothetical protein [Clostridium tetani E88]
gi|28202724|gb|AAO35169.1| hypothetical protein
[Clostridium tetani E88]
Length = 218
Score = 100 bits (248), Expect = 1e-20
Identities = 61/111 (54%), Positives = 67/111 (59%)
Frame = +2
Query: 107 GTRLEF*LFQSGISLMARTPPEGGLLRPPPKLRRKSPKPIPGNSEAS*GLSVQVQVVRIF 286
G RLEF +Q GI M LL PP L R+ + S+A GLSV +V IF
Sbjct: 105 GPRLEFQYYQGGIPRMTPQKLTLLLLSLPPILYRQYRNSMLSYSKALRGLSVLSRVASIF 164
Query: 287 TDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 439
T +ISP L RQCP YA RAGRNLPDKEFRYLRTVIVTAAVH G L
Sbjct: 165 TCTTISPDLLLRQCPSHYAIRAGRNLPDKEFRYLRTVIVTAAVHWGLSSPL 215
>ref|NP_445524.1| hypothetical protein [Chlamydophila pneumoniae AR39]
gi|11282894|pir||F81516 hypothetical protein CP0987
[imported] - Chlamydophila pneumoniae (strain AR39)
Length = 216
Score = 97.8 bits (242), Expect = 7e-20
Identities = 58/111 (52%), Positives = 69/111 (61%)
Frame = +2
Query: 107 GTRLEF*LFQSGISLMARTPPEGGLLRPPPKLRRKSPKPIPGNSEAS*GLSVQVQVVRIF 286
G L+ L ++ IS M T + L + K IP S+ S GL V ++V IF
Sbjct: 98 GVMLDSQLVKTSISTMTPTLLTKSVHSLLAILHITNQKSIPKYSKGSRGLFVLLRVNSIF 157
Query: 287 TDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 439
T +ISPSLS RQCPDRY RAGRNLPDKEFRYL TVIVTAA+H+G G L
Sbjct: 158 TATTISPSLSLRQCPDRYTIRAGRNLPDKEFRYLSTVIVTAAIHQGLGSML 208
>ref|NP_737498.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|25029359|ref|NP_739413.1| conserved hypothetical
protein [Corynebacterium efficiens YS-314]
gi|23492726|dbj|BAC17698.1| hypothetical protein
[Corynebacterium efficiens YS-314]
gi|23494647|dbj|BAC19613.1| conserved hypothetical
protein [Corynebacterium efficiens YS-314]
Length = 66
Score = 69.3 bits (168), Expect = 3e-11
Identities = 40/65 (61%), Positives = 45/65 (68%), Gaps = 1/65 (1%)
Frame = +2
Query: 320 RQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL-PCHQVTNFLDLPALGRRQP 496
RQ RYA RAGRNLPDKEFRYLR VIVT AV+ G +L Q+T L+LPA GRRQ
Sbjct: 2 RQQGSRYAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRRLTQLTGPLNLPAPGRRQS 61
Query: 497 PYMVL 511
Y+ L
Sbjct: 62 VYINL 66
>ref|NP_738153.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|25028996|ref|NP_739050.1| hypothetical protein
[Corynebacterium efficiens YS-314]
gi|25029350|ref|NP_739404.1| hypothetical protein
[Corynebacterium efficiens YS-314]
gi|23493383|dbj|BAC18353.1| conserved hypothetical
protein [Corynebacterium efficiens YS-314]
gi|23494283|dbj|BAC19250.1| hypothetical protein
[Corynebacterium efficiens YS-314]
gi|23494638|dbj|BAC19604.1| hypothetical protein
[Corynebacterium efficiens YS-314]
Length = 261
Score = 68.9 bits (167), Expect = 3e-11
Identities = 39/63 (61%), Positives = 44/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 RQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL-PCHQVTNFLDLPALGRRQP 496
RQ RYA RAGRNLPDKEFRYLR VIVT AV+ G +L Q+T L+LPA GRRQ
Sbjct: 2 RQQGSRYAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRRLTQLTGPLNLPAPGRRQS 61
Query: 497 PYM 505
Y+
Sbjct: 62 VYI 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,974,862
Number of Sequences: 1393205
Number of extensions: 13243307
Number of successful extensions: 40117
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 36676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39938
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
