Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020965A_C01 KMC020965A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565962.1| putative CCCH-type zinc finger protein; protein... 146 2e-34
pir||E84847 probable CCCH-type zinc finger protein [imported] - ... 146 2e-34
ref|NP_196789.1| zinc finger transcription factor -like protein;... 128 4e-29
gb|AAM20612.1| zinc finger transcription factor-like protein [Ar... 128 4e-29
gb|AAO38462.1| unknown protein [Oryza sativa (japonica cultivar-... 122 4e-27
>ref|NP_565962.1| putative CCCH-type zinc finger protein; protein id: At2g41900.1,
supported by cDNA: gi_14335105, supported by cDNA:
gi_20334713 [Arabidopsis thaliana]
gi|14335106|gb|AAK59832.1| At2g41900/T6D20.20
[Arabidopsis thaliana] gi|20198317|gb|AAB63552.2|
putative CCCH-type zinc finger protein [Arabidopsis
thaliana] gi|20334714|gb|AAM16218.1| At2g41900/T6D20.20
[Arabidopsis thaliana]
Length = 716
Score = 146 bits (368), Expect = 2e-34
Identities = 71/115 (61%), Positives = 93/115 (80%)
Frame = -1
Query: 346 STNMKTLTVNTEDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLE 167
+T+M LTV TED+F+SLLELA+NND EG + + +D S ++E GLWY RQ GSK +V +
Sbjct: 31 NTDMNHLTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVND 90
Query: 166 HRTPLMVAATYGSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAV 2
+RTPLMVAATYGSIDV+K+I+S +ADVN ACG +++TALHCAASGG+V A+ V
Sbjct: 91 YRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVV 145
>pir||E84847 probable CCCH-type zinc finger protein [imported] - Arabidopsis
thaliana
Length = 727
Score = 146 bits (368), Expect = 2e-34
Identities = 71/115 (61%), Positives = 93/115 (80%)
Frame = -1
Query: 346 STNMKTLTVNTEDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLE 167
+T+M LTV TED+F+SLLELA+NND EG + + +D S ++E GLWY RQ GSK +V +
Sbjct: 42 NTDMNHLTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVND 101
Query: 166 HRTPLMVAATYGSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAV 2
+RTPLMVAATYGSIDV+K+I+S +ADVN ACG +++TALHCAASGG+V A+ V
Sbjct: 102 YRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVV 156
>ref|NP_196789.1| zinc finger transcription factor -like protein; protein id:
At5g12850.1, supported by cDNA: gi_20466589 [Arabidopsis
thaliana] gi|11358930|pir||T49899 zinc finger
transcription factor-like protein - Arabidopsis thaliana
gi|7630041|emb|CAB88249.1| zinc finger transcription
factor-like protein [Arabidopsis thaliana]
Length = 706
Score = 128 bits (322), Expect = 4e-29
Identities = 64/104 (61%), Positives = 82/104 (78%)
Frame = -1
Query: 313 EDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLEHRTPLMVAATY 134
E SFS+LLE A++ND EGF+ L D S IN++GLWY RQ +++VLE RTPLMVA+ Y
Sbjct: 36 EHSFSALLEFAADNDVEGFRRQL-SDVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLY 94
Query: 133 GSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAV 2
GS+DV+K ILS PEA++N +CG +KSTALHCAASG SV ++D V
Sbjct: 95 GSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVV 138
>gb|AAM20612.1| zinc finger transcription factor-like protein [Arabidopsis
thaliana] gi|22136426|gb|AAM91291.1| zinc finger
transcription factor-like protein [Arabidopsis thaliana]
Length = 706
Score = 128 bits (322), Expect = 4e-29
Identities = 64/104 (61%), Positives = 82/104 (78%)
Frame = -1
Query: 313 EDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLEHRTPLMVAATY 134
E SFS+LLE A++ND EGF+ L D S IN++GLWY RQ +++VLE RTPLMVA+ Y
Sbjct: 36 EHSFSALLEFAADNDVEGFRRQL-SDVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLY 94
Query: 133 GSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAV 2
GS+DV+K ILS PEA++N +CG +KSTALHCAASG SV ++D V
Sbjct: 95 GSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVV 138
>gb|AAO38462.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 749
Score = 122 bits (305), Expect = 4e-27
Identities = 65/121 (53%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Frame = -1
Query: 361 SAGQVSTNMKTLTVNTEDSFSSLLELASNNDFEGFKELLYK-DASSINEVGLWYVRQNGS 185
+A V+ KTLTV+T+D+F+ LLELA+++D EG + L + ++ +E GLWY R+
Sbjct: 33 AAAAVAEMAKTLTVDTDDAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGRRK-- 90
Query: 184 KQIVLEHRTPLMVAATYGSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDA 5
VLEHRTPLMVAATYGS+ VL+++LS P DVN CG + +TALHCAASGGS V+A
Sbjct: 91 ---VLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEA 147
Query: 4 V 2
V
Sbjct: 148 V 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,018,060
Number of Sequences: 1393205
Number of extensions: 8733170
Number of successful extensions: 33911
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 31007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33647
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
