Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020896A_C01 KMC020896A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564687.1| expressed protein; protein id: At1g55370.1, sup... 129 4e-29
gb|AAL58965.1|AC091811_14 putative antifreeze glycoprotein precu... 127 1e-28
gb|AAM64767.1| unknown [Arabidopsis thaliana] 125 3e-28
gb|AAN06836.1| Hypothetical protein [Oryza sativa (japonica cult... 69 3e-11
ref|NP_564840.1| expressed protein; protein id: At1g64770.1, sup... 64 2e-09
>ref|NP_564687.1| expressed protein; protein id: At1g55370.1, supported by cDNA:
32881. [Arabidopsis thaliana] gi|25405825|pir||A96596
hypothetical protein T18I3.2 [imported] - Arabidopsis
thaliana gi|12321610|gb|AAG50849.1|AC079287_2
hypothetical protein [Arabidopsis thaliana]
gi|12323162|gb|AAG51558.1|AC027034_4 hypothetical
protein; 3570-2351 [Arabidopsis thaliana]
Length = 354
Score = 129 bits (323), Expect = 4e-29
Identities = 64/116 (55%), Positives = 81/116 (69%)
Frame = -1
Query: 553 PRWGANSQNSETEGSQGGIEEITGEEMESYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVV 374
PR+G E E G GEE +YKQL ++S +YT AP+SFTVIDRGRRNSVV
Sbjct: 243 PRFGVVQGEKEEEKPGFG-----GEEESNYKQLNREMSRIYTCAPKSFTVIDRGRRNSVV 297
Query: 373 IGRNGFEETYLYSPGSRVESYSKDAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPN 206
+GR GFEE Y+YSPGSR+ESY+K AY+C+G +++L PI L VW+G +L NPN
Sbjct: 298 VGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLLSPISLESGCVWRGVLHLHNPN 353
>gb|AAL58965.1|AC091811_14 putative antifreeze glycoprotein precursor [Oryza sativa]
Length = 411
Score = 127 bits (318), Expect = 1e-28
Identities = 61/128 (47%), Positives = 84/128 (64%), Gaps = 3/128 (2%)
Frame = -1
Query: 577 SSPLKQLFPRWGANSQNSETEGSQGG---IEEITGEEMESYKQLRDKLSLVYTNAPRSFT 407
SS L RW ++ G GG +E GEE + YK++ +++ +Y++APR FT
Sbjct: 285 SSSATTLARRWATKGFDAVLSGGGGGGAGAQEADGEEDDDYKRMTEEMCRIYSHAPRQFT 344
Query: 406 VIDRGRRNSVVIGRNGFEETYLYSPGSRVESYSKDAYICVGQAAVLQPIVLGPEEVWKGG 227
+IDRGRRNS+ + R GFEE Y++SPGS+ + Y K AY+CVG A+L+PIVL P W G
Sbjct: 345 IIDRGRRNSICVQRRGFEEVYVFSPGSKYQWYGKYAYVCVG-PAMLEPIVLSPGATWSGA 403
Query: 226 QYLQNPNL 203
QYL+NPNL
Sbjct: 404 QYLRNPNL 411
>gb|AAM64767.1| unknown [Arabidopsis thaliana]
Length = 354
Score = 125 bits (315), Expect = 3e-28
Identities = 63/116 (54%), Positives = 80/116 (68%)
Frame = -1
Query: 553 PRWGANSQNSETEGSQGGIEEITGEEMESYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVV 374
PR+G E E G GEE +YKQL ++S +YT AP+SFTVIDRGRRNSVV
Sbjct: 243 PRFGVVQGEKEEEKPGFG-----GEEESNYKQLNREMSRIYTCAPKSFTVIDRGRRNSVV 297
Query: 373 IGRNGFEETYLYSPGSRVESYSKDAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPN 206
+GR GFEE Y+YS GSR+ESY+K AY+C+G +++L PI L VW+G +L NPN
Sbjct: 298 VGREGFEEVYMYSSGSRLESYTKSAYVCIGPSSLLSPISLESGCVWRGVLHLHNPN 353
>gb|AAN06836.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 399
Score = 69.3 bits (168), Expect = 3e-11
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = -1
Query: 436 VYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSRVESYSKDAYICVGQAAVLQPIV 257
+Y+ AP FT ID+ + R G+E+ YL SPG + KD ++C G A++L P+V
Sbjct: 322 IYSTAPSKFTTIDQNSGLGFRVVRMGYEDMYLCSPGEMYRKFGKDYFLCTGTASMLVPVV 381
Query: 256 LGPEEVWKGGQYLQNPNL 203
+ P E W+ Q +++ NL
Sbjct: 382 VNPGEEWRAAQVIEHDNL 399
>ref|NP_564840.1| expressed protein; protein id: At1g64770.1, supported by cDNA:
19759., supported by cDNA: gi_15028028, supported by
cDNA: gi_21280796 [Arabidopsis thaliana]
gi|15028029|gb|AAK76545.1| unknown protein [Arabidopsis
thaliana] gi|21280797|gb|AAM45001.1| unknown protein
[Arabidopsis thaliana] gi|21554059|gb|AAM63140.1|
unknown [Arabidopsis thaliana]
Length = 348
Score = 63.5 bits (153), Expect = 2e-09
Identities = 43/139 (30%), Positives = 64/139 (45%), Gaps = 14/139 (10%)
Frame = -1
Query: 577 SSPLKQLFPRWGANSQNSETEGSQGGIEEITGEEMESYKQLRDK-------------LSL 437
SSP + L P +++S GS+ G + +S L +K L
Sbjct: 210 SSPFELLSPSEAMKAESSGWFGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKA 269
Query: 436 VYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSRVESYSKDAY-ICVGQAAVLQPI 260
VY P F ID+GR + R GFEE Y+ SPGS + Y K Y +C G ++L P+
Sbjct: 270 VYNTPPSKFETIDQGRGLFFRMIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPV 329
Query: 259 VLGPEEVWKGGQYLQNPNL 203
+ E W+G +++ NL
Sbjct: 330 DVASGETWRGAMVIEHDNL 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,706,190
Number of Sequences: 1393205
Number of extensions: 10617204
Number of successful extensions: 27771
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 27237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27762
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
