Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020847A_C01 KMC020847A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P08926|RUBA_PEA RuBisCO subunit binding-protein alpha subunit... 295 3e-79
sp|P08824|RUBA_RICCO RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUN... 292 2e-78
emb|CAB51619.1| rubisco subunit binding-protein alpha subunit ( ... 292 2e-78
gb|AAC68501.1| chaperonin 60 alpha subunit [Canavalia lineata] 288 2e-77
sp|P21239|RUB1_BRANA RuBisCO subunit binding-protein alpha subun... 282 1e-75
>sp|P08926|RUBA_PEA RuBisCO subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit) (CPN-60
alpha) gi|7443854|pir||T06518 chaperonin 60 alpha chain
precursor, chloroplast - garden pea
gi|1185390|gb|AAA87731.1| alphacpn60 precursor [Pisum
sativum]
Length = 587
Score = 295 bits (754), Expect = 3e-79
Identities = 158/166 (95%), Positives = 164/166 (98%)
Frame = -1
Query: 500 ITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGF 321
ITDQKISAIKDIIPLLEKTTQLRAPLLII+EDITGEALATLVVNKLRGILNVAAIK+PGF
Sbjct: 267 ITDQKISAIKDIIPLLEKTTQLRAPLLIISEDITGEALATLVVNKLRGILNVAAIKAPGF 326
Query: 320 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDE 141
GERRKALLQDIAILTGAEFQASDLGLLVENT++EQLGLARKVTISKDSTTIIADAASKDE
Sbjct: 327 GERRKALLQDIAILTGAEFQASDLGLLVENTTIEQLGLARKVTISKDSTTIIADAASKDE 386
Query: 140 LQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATET 3
LQ+RVAQLKKEL TDS+YDSEKLAERIAKLSGGVAVIKVGAATET
Sbjct: 387 LQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATET 432
>sp|P08824|RUBA_RICCO RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT (60 KD CHAPERONIN
ALPHA SUBUNIT) (CPN-60 ALPHA) gi|72958|pir||HHCSBA
chaperonin groEL - castor bean (fragment)
Length = 495
Score = 292 bits (747), Expect = 2e-78
Identities = 154/166 (92%), Positives = 164/166 (98%)
Frame = -1
Query: 500 ITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGF 321
+TDQKI+AIKDIIPLLEKTTQLRAPLLIIAED+TGEALATLVVNK+RGILNVAAIK+PGF
Sbjct: 209 VTDQKITAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKMRGILNVAAIKAPGF 268
Query: 320 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDE 141
GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLG+ARKVTI+KDSTT+IADAASKDE
Sbjct: 269 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGIARKVTITKDSTTLIADAASKDE 328
Query: 140 LQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATET 3
LQAR+AQLK+EL TDSVYDSEKLAERIAKLSGGVAVIKVGAATET
Sbjct: 329 LQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATET 374
>emb|CAB51619.1| rubisco subunit binding-protein alpha subunit ( 495 AA) (1 is 3rd
base in codon) (1488 is 2nd base in codon) [Ricinus
communis]
Length = 496
Score = 292 bits (747), Expect = 2e-78
Identities = 154/166 (92%), Positives = 164/166 (98%)
Frame = -1
Query: 500 ITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGF 321
+TDQKI+AIKDIIPLLEKTTQLRAPLLIIAED+TGEALATLVVNK+RGILNVAAIK+PGF
Sbjct: 209 VTDQKITAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKMRGILNVAAIKAPGF 268
Query: 320 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDE 141
GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLG+ARKVTI+KDSTT+IADAASKDE
Sbjct: 269 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGIARKVTITKDSTTLIADAASKDE 328
Query: 140 LQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATET 3
LQAR+AQLK+EL TDSVYDSEKLAERIAKLSGGVAVIKVGAATET
Sbjct: 329 LQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATET 374
>gb|AAC68501.1| chaperonin 60 alpha subunit [Canavalia lineata]
Length = 581
Score = 288 bits (737), Expect = 2e-77
Identities = 154/166 (92%), Positives = 161/166 (96%)
Frame = -1
Query: 500 ITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGF 321
+TDQKISAIKDIIPLLEKTTQLRAPL+IIAED+TGEALATLVVNKLRGILNVAAIK+P F
Sbjct: 263 VTDQKISAIKDIIPLLEKTTQLRAPLIIIAEDVTGEALATLVVNKLRGILNVAAIKAPSF 322
Query: 320 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDE 141
GERRKA+LQDIAILTGAEFQASDLGLLVENTS+EQLGLARKVTISKDSTTIIADAASKDE
Sbjct: 323 GERRKAVLQDIAILTGAEFQASDLGLLVENTSIEQLGLARKVTISKDSTTIIADAASKDE 382
Query: 140 LQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATET 3
LQARVAQLKKEL TD+VYDS KLAERI KLSGGVAVIKVGAATET
Sbjct: 383 LQARVAQLKKELAETDAVYDSVKLAERITKLSGGVAVIKVGAATET 428
>sp|P21239|RUB1_BRANA RuBisCO subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit) (CPN-60
alpha) gi|289365|gb|AAA32979.1| 60-kDa chaperonin-60
alpha-polypeptide precursor
Length = 546
Score = 282 bits (722), Expect = 1e-75
Identities = 145/166 (87%), Positives = 162/166 (97%)
Frame = -1
Query: 500 ITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKSPGF 321
ITDQKI+AIKDIIP+LEKTTQLRAPLLIIAED+TGEALATLVVNKLRG+LNV A+K+PGF
Sbjct: 226 ITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGF 285
Query: 320 GERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDE 141
GERRKA+LQDIAILTGAE+QA D+GLLVENT+++QLG+ARKVTISKDSTT+IADAASKDE
Sbjct: 286 GERRKAMLQDIAILTGAEYQALDMGLLVENTTIDQLGIARKVTISKDSTTLIADAASKDE 345
Query: 140 LQARVAQLKKELFATDSVYDSEKLAERIAKLSGGVAVIKVGAATET 3
LQAR++QLKKEL TDSVYDSEKLAERIAKL+GGVAVIKVGAATET
Sbjct: 346 LQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATET 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,678,426
Number of Sequences: 1393205
Number of extensions: 8750006
Number of successful extensions: 23912
Number of sequences better than 10.0: 1375
Number of HSP's better than 10.0 without gapping: 22163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23326
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
