Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020838A_C01 KMC020838A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA09495.1| agCP15114 [Anopheles gambiae str. PEST] 33 4.5
ref|NP_572131.1| ORF 74; an IL-8 receptor-like G protein coupled... 33 4.5
gb|AAD56655.1|AF179928_1 IL-8 receptor-like G protein coupled re... 33 4.5
gb|AAD04749.1| G-protein coupled receptor homolog [Human herpesv... 33 4.5
gb|AAC28486.1| G-protein coupled receptor [Human herpesvirus 8] 33 4.5
>gb|EAA09495.1| agCP15114 [Anopheles gambiae str. PEST]
Length = 119
Score = 32.7 bits (73), Expect = 4.5
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = +1
Query: 64 GLGHQTR*RHNWAATTHAKNPYDSTHPIQ*TMKTNVAANKTL 189
G GH RHNW A PY HPI + T++ + +
Sbjct: 4 GNGHMVIDRHNWGAQQGVHGPYKLPHPIPYVLITHIGVHSEI 45
>ref|NP_572131.1| ORF 74; an IL-8 receptor-like G protein coupled receptor homolog
[Human herpesvirus 8] gi|3183195|sp|Q98146|VG74_KSHV
G-protein coupled receptor homolog 74
gi|1718331|gb|AAC57160.1| ORF 74; an IL-8 receptor-like
G protein coupled receptor homolog [Human herpesvirus 8]
gi|2246493|gb|AAB62618.1| ORF 74, IL-8 receptor-like G
protein coupled receptor homolog [Human herpesvirus 8]
gi|3551771|gb|AAC34949.1| putative G-protein coupled
receptor [Human herpesvirus 8]
gi|5669896|gb|AAD46503.1|AF148805_8 v-GPCR [Human
herpesvirus 8] gi|5929960|gb|AAD56656.1|AF179929_1 IL-8
receptor-like G protein coupled receptor homolog [Human
herpesvirus 8] gi|5929961|gb|AAD56657.1|AF179930_1 IL-8
receptor-like G protein coupled receptor homolog [Human
herpesvirus 8] gi|5929962|gb|AAD56658.1|AF179931_1 IL-8
receptor-like G protein coupled receptor homolog [Human
herpesvirus 8] gi|14039894|gb|AAK53416.1|AF367765_2 G
protein-coupled receptor [Human herpesvirus 8]
gi|14039898|gb|AAK53418.1|AF367766_2 G protein-coupled
receptor [Human herpesvirus 8]
gi|14039901|gb|AAK53419.1|AF367767_1 G protein-coupled
receptor [Human herpesvirus 8]
Length = 342
Score = 32.7 bits (73), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 312 LNYIIIEASKLIEKLFYLYPGFHSFKVCKLSVFFFF 205
LN + + S L E L +L+P S +C+L +FF++
Sbjct: 91 LNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYY 126
>gb|AAD56655.1|AF179928_1 IL-8 receptor-like G protein coupled receptor homolog [Human
herpesvirus 8]
Length = 342
Score = 32.7 bits (73), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 312 LNYIIIEASKLIEKLFYLYPGFHSFKVCKLSVFFFF 205
LN + + S L E L +L+P S +C+L +FF++
Sbjct: 91 LNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYY 126
>gb|AAD04749.1| G-protein coupled receptor homolog [Human herpesvirus 8]
Length = 342
Score = 32.7 bits (73), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 312 LNYIIIEASKLIEKLFYLYPGFHSFKVCKLSVFFFF 205
LN + + S L E L +L+P S +C+L +FF++
Sbjct: 91 LNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYY 126
>gb|AAC28486.1| G-protein coupled receptor [Human herpesvirus 8]
Length = 342
Score = 32.7 bits (73), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 312 LNYIIIEASKLIEKLFYLYPGFHSFKVCKLSVFFFF 205
LN + + S L E L +L+P S +C+L +FF++
Sbjct: 91 LNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYY 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,625,784
Number of Sequences: 1393205
Number of extensions: 11422177
Number of successful extensions: 22704
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22699
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
