Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020833A_C01 KMC020833A_c01
(383 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010003.2| Hypothetical ORF; Ycr079wp [Saccharomyces cerev... 31 4.3
ref|NP_465570.1| weakly similar to ketopantoate reductase involv... 31 4.3
sp|P25646|YCW9_YEAST Protein phophatase 2C-like protein YCR079W ... 31 4.3
gb|AAO52598.1| similar to Dictyostelium discoideum (Slime mold).... 31 4.3
ref|XP_150989.1| hypothetical protein XP_150989 [Mus musculus] 30 7.4
>ref|NP_010003.2| Hypothetical ORF; Ycr079wp [Saccharomyces cerevisiae]
gi|14588958|emb|CAC42991.1| hypothetical protein
[Saccharomyces cerevisiae]
Length = 442
Score = 30.8 bits (68), Expect = 4.3
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +3
Query: 48 TWQKPRASLKSDFRFHGHWKKEVDLSSDSSLKLCDNEEMRAEKTYDPAKLIIQVRQYSAK 227
+W S + F GH +K LS + KLC + + E ++D L V++Y+ +
Sbjct: 53 SWPNAYGSALNCSVFDGHGEKGAQLSQLLADKLCSSLDF-PEPSWDKQDLKKLVQEYARR 111
Query: 228 ----QIYKAKKTXYK--YNLNIKLS*HKQETHFLKESYLRTSLVLLMSGG 359
+K K + ++ YN IK KQE +KE S +L +GG
Sbjct: 112 FPEGNYWKHKLSTFEKFYNKFIKNCNSKQELLLMKEG---DSAILGQNGG 158
>ref|NP_465570.1| weakly similar to ketopantoate reductase involved in thiamin
biosynthesis [Listeria monocytogenes EGD-e]
gi|20138986|sp|Q8Y5L2|PANE_LISMO Putative
2-dehydropantoate 2-reductase (Ketopantoate reductase)
(KPA reductase) (KPR) gi|25366768|pir||AF1330
ketopantoate reductase involved in thiamin biosynthesis
homolog lmo2046 [imported] - Listeria monocytogenes
(strain EGD-e) gi|16411516|emb|CAD00124.1| weakly
similar to ketopantoate reductase involved in thiamin
biosynthesis [Listeria monocytogenes]
Length = 297
Score = 30.8 bits (68), Expect = 4.3
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 11/54 (20%)
Frame = +3
Query: 105 KKEVDLSSDSSLKLCDNEEMR-----------AEKTYDPAKLIIQVRQYSAKQI 233
K++ DL + L L DN E++ AEK + LII V+QYS K I
Sbjct: 36 KEQSDLLNQKGLSLKDNSELKNIHIQATVITDAEKLSEQELLIIAVKQYSLKTI 89
>sp|P25646|YCW9_YEAST Protein phophatase 2C-like protein YCR079W gi|83256|pir||S19493
hypothetical protein YCR079w - yeast (Saccharomyces
cerevisiae)
Length = 435
Score = 30.8 bits (68), Expect = 4.3
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +3
Query: 48 TWQKPRASLKSDFRFHGHWKKEVDLSSDSSLKLCDNEEMRAEKTYDPAKLIIQVRQYSAK 227
+W S + F GH +K LS + KLC + + E ++D L V++Y+ +
Sbjct: 53 SWPNAYGSALNCSVFDGHGEKGAQLSQLLADKLCSSLDF-PEPSWDKQDLKKLVQEYARR 111
Query: 228 ----QIYKAKKTXYK--YNLNIKLS*HKQETHFLKESYLRTSLVLLMSGG 359
+K K + ++ YN IK KQE +KE S +L +GG
Sbjct: 112 FPEGNYWKHKLSTFEKFYNKFIKNCNSKQELLLMKEG---DSAILGQNGG 158
>gb|AAO52598.1| similar to Dictyostelium discoideum (Slime mold). CIGB protein
(Fragment)
Length = 648
Score = 30.8 bits (68), Expect = 4.3
Identities = 20/58 (34%), Positives = 29/58 (49%)
Frame = -3
Query: 186 GHKFSQLSFLRCHTILEKSQKTDPPPFSSDRENENQILGWLLVFAKCCLCNDIGCQLI 13
GHKF+++S ++LEK QK P RE++ I+ A CND+ Q I
Sbjct: 133 GHKFTEISKPFASSLLEKFQKQQFPNLLGYRESDKHIIS-----ALDYCCNDVERQHI 185
>ref|XP_150989.1| hypothetical protein XP_150989 [Mus musculus]
Length = 151
Score = 30.0 bits (66), Expect = 7.4
Identities = 11/30 (36%), Positives = 16/30 (52%)
Frame = -3
Query: 93 ENENQILGWLLVFAKCCLCNDIGCQLIGPY 4
EN+N +L W CC ++G Q GP+
Sbjct: 77 ENDNPVLKWSQTIQPCCCRTNLGSQRNGPF 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,788,580
Number of Sequences: 1393205
Number of extensions: 4713706
Number of successful extensions: 10901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10899
length of database: 448,689,247
effective HSP length: 103
effective length of database: 305,189,132
effective search space used: 7324539168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
