Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020830A_C01 KMC020830A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188630.1| myosin; protein id: At3g19960.1, supported by c... 89 2e-17
pir||S33812 myosin-like protein ATM - Arabidopsis thaliana gi|64... 89 2e-17
gb|AAM14075.1| putative myosin [Arabidopsis thaliana] 89 2e-17
pir||T14275 myosin-like protein my1 - common sunflower gi|244417... 88 5e-17
pir||G96539 hypothetical protein F14I3.6 [imported] - Arabidopsi... 81 6e-15
>ref|NP_188630.1| myosin; protein id: At3g19960.1, supported by cDNA: gi_20268743
[Arabidopsis thaliana] gi|11994771|dbj|BAB03161.1|
myosin-like protein [Arabidopsis thaliana]
gi|25054927|gb|AAN71940.1| putative myosin [Arabidopsis
thaliana]
Length = 1166
Score = 89.4 bits (220), Expect = 2e-17
Identities = 41/54 (75%), Positives = 49/54 (89%), Gaps = 2/54 (3%)
Frame = -1
Query: 506 ELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDS--ALDQVKKSWWGRRNSTR 351
ELRRLKQMFE WKKDYG RLRETK+IL+KLGSE+S ++++VK+ WWGRRNSTR
Sbjct: 1112 ELRRLKQMFETWKKDYGGRLRETKLILSKLGSEESSGSMEKVKRKWWGRRNSTR 1165
>pir||S33812 myosin-like protein ATM - Arabidopsis thaliana
gi|6491702|emb|CAB61875.1| myosin [Arabidopsis thaliana]
Length = 1166
Score = 89.4 bits (220), Expect = 2e-17
Identities = 41/54 (75%), Positives = 49/54 (89%), Gaps = 2/54 (3%)
Frame = -1
Query: 506 ELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDS--ALDQVKKSWWGRRNSTR 351
ELRRLKQMFE WKKDYG RLRETK+IL+KLGSE+S ++++VK+ WWGRRNSTR
Sbjct: 1112 ELRRLKQMFETWKKDYGGRLRETKLILSKLGSEESSGSMEKVKRKWWGRRNSTR 1165
>gb|AAM14075.1| putative myosin [Arabidopsis thaliana]
Length = 1166
Score = 89.4 bits (220), Expect = 2e-17
Identities = 41/54 (75%), Positives = 49/54 (89%), Gaps = 2/54 (3%)
Frame = -1
Query: 506 ELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDS--ALDQVKKSWWGRRNSTR 351
ELRRLKQMFE WKKDYG RLRETK+IL+KLGSE+S ++++VK+ WWGRRNSTR
Sbjct: 1112 ELRRLKQMFETWKKDYGGRLRETKLILSKLGSEESSGSMEKVKRKWWGRRNSTR 1165
>pir||T14275 myosin-like protein my1 - common sunflower gi|2444174|gb|AAB71526.1|
unconventional myosin [Helianthus annuus]
Length = 1120
Score = 88.2 bits (217), Expect = 5e-17
Identities = 41/54 (75%), Positives = 45/54 (82%)
Frame = -1
Query: 506 ELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDSALDQVKKSWWGRRNSTRIN 345
ELRRLKQMFE WKKDY ARLRETKVILNKLG ED ++ KK WWGR NS+R+N
Sbjct: 1067 ELRRLKQMFEGWKKDYTARLRETKVILNKLGHEDGDGEKGKKKWWGRLNSSRVN 1120
>pir||G96539 hypothetical protein F14I3.6 [imported] - Arabidopsis thaliana
gi|5734787|gb|AAD50052.1|AC007980_17 Highly similar to
myosin [Arabidopsis thaliana]
Length = 1155
Score = 81.3 bits (199), Expect = 6e-15
Identities = 38/54 (70%), Positives = 46/54 (84%), Gaps = 2/54 (3%)
Frame = -1
Query: 506 ELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDS--ALDQVKKSWWGRRNSTR 351
ELRRLKQMFE WKKDYG RLRETK+IL+KLGSE++ + ++VK +WWGR STR
Sbjct: 1101 ELRRLKQMFETWKKDYGGRLRETKLILSKLGSEETGGSAEKVKMNWWGRLRSTR 1154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,457,428
Number of Sequences: 1393205
Number of extensions: 8414503
Number of successful extensions: 18496
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18470
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
